Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXW72_RS00035 Genome accession   NZ_CP025913
Coordinates   5039..5554 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 203740     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 39..10554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW72_RS00010 ygaZ 438..1175 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CXW72_RS00015 ygaH 1165..1500 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  CXW72_RS00020 emrR 1591..2121 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXW72_RS00025 emrA 2248..3420 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXW72_RS00030 emrB 3437..4975 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXW72_RS00035 luxS 5039..5554 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CXW72_RS00040 gshA 5704..7260 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CXW72_RS00045 yqaA 7333..7761 (-) 429 WP_001287454.1 YqaA family protein -
  CXW72_RS00050 yqaB 7758..8324 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXW72_RS00080 csrA 9648..9833 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=221031 CXW72_RS00035 WP_001130211.1 5039..5554(-) (luxS) [Escherichia coli strain 203740]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=221031 CXW72_RS00035 WP_001130211.1 5039..5554(-) (luxS) [Escherichia coli strain 203740]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731