Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXW77_RS11630 Genome accession   NZ_CP025910
Coordinates   2375252..2375767 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 204446     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2370252..2380767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW77_RS11585 csrA 2370839..2371024 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CXW77_RS11615 yqaB 2372482..2373048 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXW77_RS11620 yqaA 2373045..2373473 (+) 429 WP_001287457.1 YqaA family protein -
  CXW77_RS11625 gshA 2373546..2375102 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  CXW77_RS11630 luxS 2375252..2375767 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CXW77_RS11635 emrB 2375831..2377369 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXW77_RS11640 emrA 2377386..2378558 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXW77_RS11645 emrR 2378685..2379215 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXW77_RS11650 ygaH 2379306..2379641 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXW77_RS11655 ygaZ 2379631..2380368 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=220997 CXW77_RS11630 WP_001130210.1 2375252..2375767(+) (luxS) [Escherichia coli strain 204446]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220997 CXW77_RS11630 WP_001130210.1 2375252..2375767(+) (luxS) [Escherichia coli strain 204446]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737