Detailed information NTG0220994

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXW77_RS11240
• Genome accession: NZ_CP025910
• Coordinates: 2300819..2301811 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 204446
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2295819..2306811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXW77_RS11210	ispD	2295880..2296590 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CXW77_RS11215	ispF	2296590..2297069 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXW77_RS11220	truD	2297066..2298115 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CXW77_RS11225	surE	2298096..2298857 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXW77_RS11230	pcm	2298851..2299477 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXW77_RS11235	nlpD	2299662..2300756 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXW77_RS11240	rpoS	2300819..2301811 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXW77_RS11245	-	2301932..2302339 (-)	408	WP_001208072.1	MarR family winged helix-turn-helix transcriptional regulator	-
CXW77_RS11250	-	2302486..2303079 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CXW77_RS11255	-	2303079..2304506 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CXW77_RS11260	-	2304517..2304753 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CXW77_RS11265	ygbN	2304792..2306156 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=220994 CXW77_RS11240 WP_000081550.1 2300819..2301811(+) (rpoS) [Escherichia coli strain 204446]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=220994 CXW77_RS11240 WP_000081550.1 2300819..2301811(+) (rpoS) [Escherichia coli strain 204446]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715