Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   B5D85_RS10025 Genome accession   NZ_CP020082
Coordinates   54483..54581 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB120304     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49483..59581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D85_RS00315 (B5D85_00315) - 50343..52040 (+) 1698 WP_020904816.1 AIPR family protein -
  B5D85_RS00320 (B5D85_00320) purB 52058..53350 (+) 1293 WP_020904817.1 adenylosuccinate lyase -
  B5D85_RS00325 (B5D85_00325) comR 53481..54392 (+) 912 WP_020904818.1 helix-turn-helix domain-containing protein Regulator
  B5D85_RS10025 comS 54483..54581 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  B5D85_RS00330 (B5D85_00330) ruvB 54612..55610 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  B5D85_RS00335 (B5D85_00335) - 55748..56185 (+) 438 WP_020904819.1 low molecular weight protein-tyrosine-phosphatase -
  B5D85_RS00340 (B5D85_00340) - 56209..56610 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  B5D85_RS00345 (B5D85_00345) - 56607..58382 (+) 1776 WP_076639715.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=220941 B5D85_RS10025 WP_020833188.1 54483..54581(+) (comS) [Streptococcus pyogenes strain STAB120304]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=220941 B5D85_RS10025 WP_020833188.1 54483..54581(+) (comS) [Streptococcus pyogenes strain STAB120304]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment