Detailed information NTG0220912

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXV43_RS15915
• Genome accession: NZ_CP025903
• Coordinates: 3198399..3199391 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 300709
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3193399..3204391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXV43_RS15895	otnK	3194174..3195436 (+)	1263	WP_001737442.1	3-oxo-tetronate kinase	-
CXV43_RS15900	ygbL	3195433..3196071 (+)	639	WP_001278994.1	aldolase	-
CXV43_RS15905	ygbM	3196076..3196852 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
CXV43_RS15910	ygbN	3196941..3198305 (+)	1365	WP_000104459.1	GntP family transporter	-
CXV43_RS15915	rpoS	3198399..3199391 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXV43_RS15920	nlpD	3199454..3200548 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXV43_RS15925	pcm	3200733..3201359 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXV43_RS15930	surE	3201353..3202114 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXV43_RS15935	truD	3202095..3203144 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CXV43_RS15940	ispF	3203141..3203620 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXV43_RS15945	ispD	3203620..3204330 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=220912 CXV43_RS15915 WP_000081550.1 3198399..3199391(-) (rpoS) [Escherichia coli strain 300709]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=220912 CXV43_RS15915 WP_000081550.1 3198399..3199391(-) (rpoS) [Escherichia coli strain 300709]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715