Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CXV43_RS12245 Genome accession   NZ_CP025903
Coordinates   2408874..2410301 (+) Length   475 a.a.
NCBI ID   WP_001737301.1    Uniprot ID   -
Organism   Escherichia coli strain 300709     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2403874..2415301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV43_RS12205 yeeW 2404057..2404251 (+) 195 WP_000988600.1 DUF5983 family protein -
  CXV43_RS12210 - 2404285..2404377 (+) 93 Protein_2402 DUF957 domain-containing protein -
  CXV43_RS12215 - 2404666..2404794 (-) 129 Protein_2403 transposase domain-containing protein -
  CXV43_RS12220 - 2404866..2405048 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CXV43_RS12225 tmaR 2405149..2405478 (-) 330 WP_000450409.1 DUF496 family protein -
  CXV43_RS12230 yeeA 2405650..2406708 (-) 1059 WP_001200891.1 FUSC family protein -
  CXV43_RS12235 sbmC 2406907..2407380 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  CXV43_RS12240 dacD 2407499..2408665 (-) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CXV43_RS12245 sbcB 2408874..2410301 (+) 1428 WP_001737301.1 exodeoxyribonuclease I Machinery gene
  CXV43_RS12250 tsuB 2410344..2410571 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CXV43_RS12255 tsuA 2410585..2411643 (-) 1059 WP_000492320.1 thiosulfate utilization transporter TsuA/YeeE -
  CXV43_RS12265 plaP 2412599..2413957 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CXV43_RS12270 yoeI 2413947..2414009 (-) 63 WP_010723108.1 membrane protein YoeI -
  CXV43_RS12275 yeeY 2414224..2415153 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.87 Da        Isoelectric Point: 5.4740

>NTDB_id=220899 CXV43_RS12245 WP_001737301.1 2408874..2410301(+) (sbcB) [Escherichia coli strain 300709]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=220899 CXV43_RS12245 WP_001737301.1 2408874..2410301(+) (sbcB) [Escherichia coli strain 300709]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.085

98.947

0.575

Multiple sequence alignment