Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   Vc3S01_RS10255 Genome accession   NZ_CP020076
Coordinates   2083031..2084452 (+) Length   473 a.a.
NCBI ID   WP_050919690.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2078031..2089452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS10235 (Vc3S01_1845) - 2078423..2079034 (-) 612 WP_077200810.1 flavin reductase family protein -
  Vc3S01_RS10240 (Vc3S01_1846) - 2079700..2080395 (+) 696 WP_045368867.1 NAD(P)H-binding protein -
  Vc3S01_RS10245 (Vc3S01_1847) - 2080589..2081962 (+) 1374 WP_045418470.1 L-cystine transporter -
  Vc3S01_RS10250 (Vc3S01_1848) - 2082189..2082869 (+) 681 WP_050919688.1 DUF1826 domain-containing protein -
  Vc3S01_RS10255 (Vc3S01_1849) sbcB 2083031..2084452 (+) 1422 WP_050919690.1 exodeoxyribonuclease I Machinery gene
  Vc3S01_RS10260 (Vc3S01_1850) - 2084511..2084885 (+) 375 WP_050919692.1 CidA/LrgA family protein -
  Vc3S01_RS10265 (Vc3S01_1851) - 2084887..2085564 (+) 678 WP_005428010.1 LrgB family protein -
  Vc3S01_RS10270 (Vc3S01_1852) cdd 2085829..2086716 (+) 888 WP_077200811.1 cytidine deaminase -
  Vc3S01_RS10275 (Vc3S01_1853) - 2086780..2087478 (-) 699 WP_077200812.1 cytidine deaminase -
  Vc3S01_RS10280 (Vc3S01_1854) purT 2087686..2088861 (+) 1176 WP_038890349.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54497.79 Da        Isoelectric Point: 4.9269

>NTDB_id=220862 Vc3S01_RS10255 WP_050919690.1 2083031..2084452(+) (sbcB) [Vibrio campbellii strain 20130629003S01]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPAPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDAFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=220862 Vc3S01_RS10255 WP_050919690.1 2083031..2084452(+) (sbcB) [Vibrio campbellii strain 20130629003S01]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTATCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
CACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTGATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGCCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAACCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCAGGCACTCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACACTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment