Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Vc3S01_RS09590 Genome accession   NZ_CP020076
Coordinates   1923379..1924920 (+) Length   513 a.a.
NCBI ID   WP_077200782.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1918379..1929920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS09565 (Vc3S01_1719) - 1918778..1919098 (+) 321 WP_005427675.1 STAS domain-containing protein -
  Vc3S01_RS09570 (Vc3S01_1720) - 1919124..1919984 (+) 861 WP_077200780.1 OmpA family protein -
  Vc3S01_RS09575 (Vc3S01_1721) - 1919981..1922083 (+) 2103 WP_077200781.1 SLBB domain-containing protein -
  Vc3S01_RS09580 (Vc3S01_1722) - 1922083..1922772 (+) 690 WP_045373954.1 AAA family ATPase -
  Vc3S01_RS09585 (Vc3S01_1723) - 1922785..1923168 (+) 384 WP_045398545.1 Hpt domain-containing protein -
  Vc3S01_RS09590 (Vc3S01_1724) luxO 1923379..1924920 (+) 1542 WP_077200782.1 sigma-54 dependent transcriptional regulator Regulator
  Vc3S01_RS09595 (Vc3S01_1725) - 1924895..1925971 (+) 1077 WP_077200783.1 glycosyltransferase -
  Vc3S01_RS09600 (Vc3S01_1726) - 1926124..1927308 (+) 1185 WP_047479338.1 glycosyltransferase -
  Vc3S01_RS09605 (Vc3S01_1727) - 1927319..1928491 (+) 1173 WP_051119187.1 glycosyltransferase family 4 protein -
  Vc3S01_RS09610 (Vc3S01_1728) - 1928484..1929905 (+) 1422 WP_077200784.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57543.50 Da        Isoelectric Point: 6.2837

>NTDB_id=220861 Vc3S01_RS09590 WP_077200782.1 1923379..1924920(+) (luxO) [Vibrio campbellii strain 20130629003S01]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEVPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPKKTPSVSPA
NAESVKETSFITQQTDSVQNEAFPTSEPTSATYSFSEPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=220861 Vc3S01_RS09590 WP_077200782.1 1923379..1924920(+) (luxO) [Vibrio campbellii strain 20130629003S01]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAAACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGTGAAGACGTTCTTGATTGGATTAATGAGAATGAGGTTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGTCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCGACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGTGCTATCCCTCGGGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACTACCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGCGGCACACTATTCTTG
GACGAGCTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAAGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCACGCTAGCAAAGCACTTTTTGCTCACTTATGCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGAGAGCGTAAAAGAAACGAGCTTCATTACCCAACAAACCGACTCCGTGCAGAATGAAGCCTTTCCAACCTCGGA
GCCAACAAGCGCCACCTATTCTTTCTCTGAGCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAACGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCAGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481

Multiple sequence alignment