Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Vc3S01_RS05680 Genome accession   NZ_CP020076
Coordinates   1179410..1180813 (+) Length   467 a.a.
NCBI ID   WP_005433212.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174410..1185813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS05655 (Vc3S01_1045) - 1174433..1175764 (+) 1332 WP_045400701.1 hypothetical protein -
  Vc3S01_RS05660 (Vc3S01_1046) - 1175784..1176224 (+) 441 WP_038889848.1 hypothetical protein -
  Vc3S01_RS05675 (Vc3S01_1047) uvrB 1177037..1179067 (+) 2031 WP_077200428.1 excinuclease ABC subunit UvrB -
  Vc3S01_RS05680 (Vc3S01_1048) luxO 1179410..1180813 (+) 1404 WP_005433212.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Vc3S01_RS05685 (Vc3S01_1049) luxU 1180810..1181154 (+) 345 WP_045400708.1 quorum-sensing phosphorelay protein LuxU -
  Vc3S01_RS05690 (Vc3S01_1050) - 1181271..1182164 (-) 894 WP_045372847.1 YvcK family protein -
  Vc3S01_RS05695 (Vc3S01_1051) moaA 1182462..1183451 (+) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  Vc3S01_RS05700 (Vc3S01_1052) moaB 1183552..1184064 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  Vc3S01_RS05705 (Vc3S01_1053) moaC 1184091..1184567 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  Vc3S01_RS05710 (Vc3S01_1054) moaD 1184567..1184824 (+) 258 WP_077200430.1 molybdopterin synthase sulfur carrier subunit -
  Vc3S01_RS05715 (Vc3S01_1055) moaE 1184826..1185281 (+) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52136.65 Da        Isoelectric Point: 5.8849

>NTDB_id=220859 Vc3S01_RS05680 WP_005433212.1 1179410..1180813(+) (luxO) [Vibrio campbellii strain 20130629003S01]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=220859 Vc3S01_RS05680 WP_005433212.1 1179410..1180813(+) (luxO) [Vibrio campbellii strain 20130629003S01]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTCGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACAGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGTTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTTCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGACGTTATTGAAATTGCATACTCGTTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTAATTGAAAGATTCAACAGTTACGAATGGCCGGGTAACGTTCGCCAGTTGCAAAACGTATTGCGCAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment