Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Vc3S01_RS03140 Genome accession   NZ_CP020076
Coordinates   630097..630615 (+) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 625097..635615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS03130 (Vc3S01_0547) gshA 627814..629382 (+) 1569 WP_005426650.1 glutamate--cysteine ligase -
  Vc3S01_RS03135 (Vc3S01_0548) - 629402..630007 (+) 606 WP_005438049.1 hypothetical protein -
  Vc3S01_RS03140 (Vc3S01_0549) luxS 630097..630615 (+) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  Vc3S01_RS03145 (Vc3S01_0550) - 630704..631978 (-) 1275 WP_005426658.1 CNNM domain-containing protein -
  Vc3S01_RS03150 (Vc3S01_0551) - 632134..632928 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  Vc3S01_RS03155 (Vc3S01_0552) ffh 633142..634524 (+) 1383 WP_005462555.1 signal recognition particle protein -
  Vc3S01_RS03160 (Vc3S01_0553) rpsP 634735..634983 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  Vc3S01_RS03165 (Vc3S01_0554) rimM 635011..635559 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=220852 Vc3S01_RS03140 WP_005426655.1 630097..630615(+) (luxS) [Vibrio campbellii strain 20130629003S01]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=220852 Vc3S01_RS03140 WP_005426655.1 630097..630615(+) (luxS) [Vibrio campbellii strain 20130629003S01]
ATGCCTTTATTAGACAGCTTTACCGTGGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTTGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTACTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTAGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTCAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment