Detailed information NTG0220849

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Vc3S01_RS03010
• Genome accession: NZ_CP020076
• Coordinates: 607364..608350 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain 20130629003S01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 602364..613350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vc3S01_RS02975 (Vc3S01_0525)	ftsB	602370..602651 (+)	282	WP_005452106.1	cell division protein FtsB	-
Vc3S01_RS02980 (Vc3S01_0526)	ispD	602653..603363 (+)	711	WP_005531669.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Vc3S01_RS02985 (Vc3S01_0527)	ispF	603378..603854 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Vc3S01_RS02990 (Vc3S01_0528)	truD	603900..604943 (+)	1044	WP_077200201.1	tRNA pseudouridine(13) synthase TruD	-
Vc3S01_RS02995 (Vc3S01_0529)	surE	604943..605719 (+)	777	WP_082242666.1	5'/3'-nucleotidase SurE	-
Vc3S01_RS03000 (Vc3S01_0530)	-	605719..606345 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Vc3S01_RS03005 (Vc3S01_0531)	-	606360..607283 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
Vc3S01_RS03010 (Vc3S01_0532)	rpoS	607364..608350 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
Vc3S01_RS03015 (Vc3S01_0533)	mutS	608439..611000 (-)	2562	WP_077200202.1	DNA mismatch repair protein MutS	-
Vc3S01_RS03020 (Vc3S01_0534)	pncC	611086..611568 (+)	483	WP_077200203.1	nicotinamide-nucleotide amidase	-
Vc3S01_RS03025 (Vc3S01_0535)	recA	611769..612812 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=220849 Vc3S01_RS03010 WP_005425361.1 607364..608350(+) (rpoS) [Vibrio campbellii strain 20130629003S01]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=220849 Vc3S01_RS03010 WP_005425361.1 607364..608350(+) (rpoS) [Vibrio campbellii strain 20130629003S01]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857