Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | Vc3S01_RS01785 | Genome accession | NZ_CP020076 |
| Coordinates | 363389..363964 (+) | Length | 191 a.a. |
| NCBI ID | WP_005432710.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain 20130629003S01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 358389..368964
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Vc3S01_RS01770 (Vc3S01_0314) | oxyR | 358657..359565 (+) | 909 | WP_005432705.1 | DNA-binding transcriptional regulator OxyR | - |
| Vc3S01_RS01775 (Vc3S01_0315) | - | 359643..362210 (-) | 2568 | WP_047482703.1 | PBP1A family penicillin-binding protein | - |
| Vc3S01_RS01780 (Vc3S01_0316) | pilM | 362389..363405 (+) | 1017 | WP_005432712.1 | type IV pilus assembly protein PilM | Machinery gene |
| Vc3S01_RS01785 (Vc3S01_0317) | pilN | 363389..363964 (+) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| Vc3S01_RS01790 (Vc3S01_0318) | pilO | 363957..364550 (+) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| Vc3S01_RS01795 (Vc3S01_0319) | pilP | 364540..365055 (+) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| Vc3S01_RS01800 (Vc3S01_0320) | pilQ | 365090..366832 (+) | 1743 | WP_050906101.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| Vc3S01_RS01805 (Vc3S01_0321) | aroK | 367021..367539 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| Vc3S01_RS01810 (Vc3S01_0322) | aroB | 367571..368671 (+) | 1101 | WP_045380637.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22194.53 Da Isoelectric Point: 9.4267
>NTDB_id=220840 Vc3S01_RS01785 WP_005432710.1 363389..363964(+) (pilN) [Vibrio campbellii strain 20130629003S01]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=220840 Vc3S01_RS01785 WP_005432710.1 363389..363964(+) (pilN) [Vibrio campbellii strain 20130629003S01]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGAATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCTGCCAAGCTTCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAGGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTTATGTTTAAAGATGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGAATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCTGCCAAGCTTCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAGGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTTATGTTTAAAGATGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
99.476 |
100 |
0.995 |
| pilN | Vibrio cholerae strain A1552 |
60.452 |
92.67 |
0.56 |