Detailed information NTG0220828

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXX03_RS14305
• Genome accession: NZ_CP025892
• Coordinates: 2861521..2862513 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 503025
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2856521..2867513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXX03_RS14280	ygbN	2857177..2858541 (+)	1365	WP_000104429.1	GntP family transporter	-
CXX03_RS14285	-	2858580..2858816 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CXX03_RS14290	-	2858827..2860253 (-)	1427	Protein_2774	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CXX03_RS14295	-	2860253..2860846 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CXX03_RS14300	-	2860993..2861400 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
CXX03_RS14305	rpoS	2861521..2862513 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXX03_RS14310	nlpD	2862576..2863670 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXX03_RS14315	pcm	2863855..2864481 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXX03_RS14320	surE	2864475..2865236 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXX03_RS14325	truD	2865217..2866266 (-)	1050	WP_001297149.1	tRNA pseudouridine(13) synthase TruD	-
CXX03_RS14330	ispF	2866263..2866742 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXX03_RS14335	ispD	2866742..2867452 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=220828 CXX03_RS14305 WP_000081550.1 2861521..2862513(-) (rpoS) [Escherichia coli strain 503025]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=220828 CXX03_RS14305 WP_000081550.1 2861521..2862513(-) (rpoS) [Escherichia coli strain 503025]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715