Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM364_RS12125 Genome accession   NZ_CP020061
Coordinates   2474233..2474829 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain AR_0117     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2469233..2479829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM364_RS12110 (AM364_12630) helD 2469441..2471495 (-) 2055 WP_009485779.1 DNA helicase IV -
  AM364_RS12115 (AM364_12635) - 2471620..2472066 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AM364_RS12120 (AM364_12640) yccS 2472084..2474219 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AM364_RS12125 (AM364_12645) sxy/tfoX 2474233..2474829 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  AM364_RS12135 (AM364_12655) sulA 2475178..2475687 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AM364_RS12140 (AM364_12660) ompA 2476040..2477110 (+) 1071 WP_002898408.1 porin OmpA -
  AM364_RS12145 (AM364_12665) matP 2477242..2477694 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AM364_RS12150 (AM364_12670) - 2477880..2479637 (+) 1758 WP_020802636.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=220775 AM364_RS12125 WP_004150836.1 2474233..2474829(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0117]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=220775 AM364_RS12125 WP_004150836.1 2474233..2474829(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0117]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment