Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM440_RS06310 Genome accession   NZ_CP020058
Coordinates   1206942..1207571 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0061     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201942..1212571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM440_RS06295 (AM440_06430) helD 1202184..1204238 (-) 2055 WP_080025575.1 DNA helicase IV -
  AM440_RS06300 (AM440_06435) yccF 1204361..1204807 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AM440_RS06305 (AM440_06440) yccS 1204817..1206979 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AM440_RS06310 (AM440_06445) sxy/tfoX 1206942..1207571 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM440_RS06315 (AM440_06450) sulA 1207790..1208299 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM440_RS06325 (AM440_06460) ompA 1208656..1209696 (+) 1041 WP_000750416.1 porin OmpA -
  AM440_RS06330 (AM440_06465) matP 1209772..1210224 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM440_RS06335 (AM440_06470) ycbZ 1210410..1212170 (+) 1761 WP_063096556.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=220747 AM440_RS06310 WP_000839153.1 1206942..1207571(-) (sxy/tfoX) [Escherichia coli strain AR_0061]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=220747 AM440_RS06310 WP_000839153.1 1206942..1207571(-) (sxy/tfoX) [Escherichia coli strain AR_0061]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment