Detailed information NTG0220746

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXX05_RS13220
• Genome accession: NZ_CP025881
• Coordinates: 2600996..2601988 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 503440
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2595996..2606988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXX05_RS13195	ygbN	2596652..2598016 (+)	1365	WP_000104429.1	GntP family transporter	-
CXX05_RS13200	-	2598055..2598291 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CXX05_RS13205	-	2598302..2599728 (-)	1427	Protein_2557	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CXX05_RS13210	-	2599728..2600321 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CXX05_RS13215	-	2600468..2600875 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
CXX05_RS13220	rpoS	2600996..2601988 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXX05_RS13225	nlpD	2602051..2603145 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXX05_RS13230	pcm	2603330..2603956 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXX05_RS13235	surE	2603950..2604711 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXX05_RS13240	truD	2604692..2605741 (-)	1050	WP_001297149.1	tRNA pseudouridine(13) synthase TruD	-
CXX05_RS13245	ispF	2605738..2606217 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXX05_RS13250	ispD	2606217..2606927 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=220746 CXX05_RS13220 WP_000081550.1 2600996..2601988(-) (rpoS) [Escherichia coli strain 503440]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=220746 CXX05_RS13220 WP_000081550.1 2600996..2601988(-) (rpoS) [Escherichia coli strain 503440]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715