Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM365_RS03970 Genome accession   NZ_CP020048
Coordinates   730680..731309 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0118     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 725680..736309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM365_RS03955 (AM365_03995) helD 725922..727976 (-) 2055 WP_000420533.1 DNA helicase IV -
  AM365_RS03960 (AM365_04000) yccF 728099..728545 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AM365_RS03965 (AM365_04005) yccS 728555..730717 (+) 2163 WP_000875020.1 YccS family putative transporter -
  AM365_RS03970 (AM365_04010) sxy/tfoX 730680..731309 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM365_RS03975 (AM365_04015) sulA 731528..732037 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM365_RS03985 (AM365_04025) ompA 732394..733434 (+) 1041 WP_000750416.1 porin OmpA -
  AM365_RS03990 (AM365_04030) matP 733510..733962 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM365_RS03995 (AM365_04035) ycbZ 734148..735908 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=220682 AM365_RS03970 WP_000839153.1 730680..731309(-) (sxy/tfoX) [Escherichia coli strain AR_0118]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=220682 AM365_RS03970 WP_000839153.1 730680..731309(-) (sxy/tfoX) [Escherichia coli strain AR_0118]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment