Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXX08_RS09345 Genome accession   NZ_CP025869
Coordinates   1910712..1911227 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 503829     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905712..1916227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX08_RS09300 csrA 1906299..1906484 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CXX08_RS09330 yqaB 1907942..1908508 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXX08_RS09335 yqaA 1908505..1908933 (+) 429 WP_001287457.1 YqaA family protein -
  CXX08_RS09340 gshA 1909006..1910562 (+) 1557 WP_001297214.1 glutamate--cysteine ligase -
  CXX08_RS09345 luxS 1910712..1911227 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CXX08_RS09350 emrB 1911291..1912829 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXX08_RS09355 emrA 1912846..1914018 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXX08_RS09360 emrR 1914145..1914675 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXX08_RS09365 ygaH 1914766..1915101 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXX08_RS09370 ygaZ 1915091..1915828 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=220679 CXX08_RS09345 WP_001130210.1 1910712..1911227(+) (luxS) [Escherichia coli strain 503829]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220679 CXX08_RS09345 WP_001130210.1 1910712..1911227(+) (luxS) [Escherichia coli strain 503829]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737