Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BVH73_RS06250 Genome accession   NZ_CP020046
Coordinates   1333481..1334998 (-) Length   505 a.a.
NCBI ID   WP_079417084.1    Uniprot ID   -
Organism   Thiomonas intermedia strain ATCC 15466     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1328481..1339998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH73_RS06230 efeU 1329254..1330114 (+) 861 WP_079417076.1 iron uptake transporter permease EfeU -
  BVH73_RS06235 efeO 1330111..1331301 (+) 1191 WP_079417078.1 iron uptake system protein EfeO -
  BVH73_RS06240 efeB 1331321..1332613 (+) 1293 WP_079417080.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  BVH73_RS06245 efeO 1332651..1333478 (+) 828 WP_079417082.1 iron uptake system protein EfeO -
  BVH73_RS06250 rpoN/rpoN1 1333481..1334998 (-) 1518 WP_079417084.1 RNA polymerase factor sigma-54 Machinery gene
  BVH73_RS06255 lptB 1335005..1335760 (-) 756 WP_079420398.1 LPS export ABC transporter ATP-binding protein -
  BVH73_RS06260 lptA 1335847..1336482 (-) 636 WP_079417086.1 lipopolysaccharide transport periplasmic protein LptA -
  BVH73_RS06265 - 1336605..1337270 (-) 666 WP_079417088.1 thiol:disulfide interchange protein DsbA/DsbL -
  BVH73_RS06270 - 1337305..1337931 (-) 627 WP_079417090.1 SPOR domain-containing protein -
  BVH73_RS06275 argS 1337999..1339753 (-) 1755 WP_079417092.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55338.96 Da        Isoelectric Point: 4.4954

>NTDB_id=220672 BVH73_RS06250 WP_079417084.1 1333481..1334998(-) (rpoN/rpoN1) [Thiomonas intermedia strain ATCC 15466]
MKPSLNLRLSQHLALTPQLQQSIRLLQLSTLELTQEIEGLLESNPFLEPEETEDPSAAATTSEPQAALTPDVPQVATEGH
ETAAEPTAELQLETQDWTASSGETDHGADIDADADSWVSSGQSAGGSGDDDEFSALDVASEQIDLRDHLRAQLAGLALSA
TDRAAAEAIIDSLDDDGYLPDTPLELALALAPAADAEQIEDLSDALTTAMRLIQSFDPAGVAGHDLADCLCLQLLRQPRC
AVRELALQICRGGHLDMLARRDWRKLERQLEADENALRQAQQRIAQLDPHPGGAFRRDAAQAVTPDVIARKTPQGWTAQL
NPEVMPKLRVNQIYADAMRRARDSGGAMQGQLQEARWFVKNVQQRFETIQRVSQTIVERQQRFFDFGPVAMRPMVLREIA
DELGLHESTISRVTTQKFMLTPFGTVELKYFFGSGLSTEAGGNTSSTAVRELIRRLVAEENSAKPLSDSELAERLTQQGV
QVARRTVAKYREALRIAPANLRKTG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=220672 BVH73_RS06250 WP_079417084.1 1333481..1334998(-) (rpoN/rpoN1) [Thiomonas intermedia strain ATCC 15466]
ATGAAACCGTCGCTGAATCTGCGCCTGTCCCAGCATCTCGCGCTCACGCCGCAGTTGCAGCAGTCCATTCGCCTGCTGCA
ACTCTCCACGCTCGAACTCACGCAAGAGATCGAAGGTCTGCTCGAATCCAATCCGTTTCTCGAACCCGAAGAAACGGAGG
ATCCGTCGGCCGCTGCGACGACGTCCGAGCCGCAGGCGGCGTTGACGCCCGACGTGCCCCAGGTGGCCACCGAGGGGCAT
GAGACCGCGGCTGAGCCCACTGCCGAACTGCAGCTCGAAACGCAGGACTGGACGGCCAGCAGCGGCGAGACCGATCACGG
CGCCGATATCGATGCCGACGCTGACTCCTGGGTCAGCTCAGGCCAGAGCGCCGGAGGCAGCGGGGACGACGACGAATTCA
GCGCCCTGGACGTTGCTTCTGAGCAGATCGATTTGCGCGATCATTTGCGGGCGCAGCTTGCCGGGCTGGCCTTGAGCGCC
ACCGACCGCGCGGCCGCGGAGGCCATCATCGATTCCCTCGACGACGATGGCTATCTGCCCGACACGCCCCTGGAGCTGGC
GCTGGCCCTCGCCCCCGCGGCAGATGCCGAACAGATCGAAGACCTGTCCGACGCGCTCACCACGGCCATGCGACTGATCC
AGAGCTTCGATCCGGCCGGGGTGGCCGGGCACGATCTGGCCGATTGCCTTTGTTTGCAGTTGCTGCGTCAGCCGCGTTGC
GCCGTGCGAGAGCTGGCCCTGCAGATTTGCCGCGGCGGCCATCTGGACATGCTGGCCAGGCGCGACTGGCGCAAGCTCGA
ACGCCAGCTCGAGGCCGATGAAAACGCGTTACGCCAGGCGCAGCAACGCATCGCCCAGCTCGACCCGCATCCGGGTGGCG
CTTTCCGCCGCGATGCCGCGCAAGCGGTGACGCCCGATGTGATCGCCCGCAAGACCCCGCAAGGCTGGACGGCGCAGCTC
AATCCCGAGGTCATGCCCAAGCTGCGGGTGAACCAGATCTATGCCGATGCCATGCGCCGAGCGCGCGACAGCGGTGGCGC
CATGCAGGGCCAGCTTCAGGAGGCGCGCTGGTTCGTGAAGAACGTACAGCAGCGTTTCGAGACCATTCAGCGCGTCTCGC
AGACCATTGTCGAGCGCCAGCAGCGGTTCTTCGACTTCGGCCCGGTGGCCATGCGGCCGATGGTGCTGCGTGAAATCGCC
GACGAACTCGGGCTGCACGAATCGACCATCTCGCGCGTGACCACCCAGAAGTTCATGCTCACGCCCTTTGGCACCGTGGA
GCTGAAGTATTTCTTCGGCTCCGGCCTGAGCACCGAGGCCGGGGGCAACACCTCGTCCACGGCGGTGCGCGAACTCATCC
GGCGCCTCGTTGCAGAGGAAAACAGCGCCAAGCCCCTGTCGGACAGCGAACTCGCCGAGCGCCTCACGCAGCAAGGCGTG
CAGGTCGCACGGCGCACCGTGGCGAAGTACCGCGAGGCCCTGCGCATCGCCCCGGCGAATCTGCGCAAGACGGGCTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-503)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(138-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.581

100

0.517

Multiple sequence alignment