Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   B5D75_RS07040 Genome accession   NZ_CP020045
Coordinates   1388800..1389111 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 35925     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383800..1394111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D75_RS07020 (B5D75_07020) ctsE 1384669..1386228 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  B5D75_RS07025 (B5D75_07025) ctsX 1386218..1386805 (-) 588 WP_002851370.1 membrane protein Machinery gene
  B5D75_RS07030 (B5D75_07030) ctsP 1386809..1387417 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  B5D75_RS07035 (B5D75_07035) ctsD 1387410..1388822 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  B5D75_RS07040 (B5D75_07040) ctsR 1388800..1389111 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  B5D75_RS07045 (B5D75_07045) nifJ 1389135..1392695 (-) 3561 WP_002921284.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  B5D75_RS07050 (B5D75_07050) - 1392788..1393429 (-) 642 WP_044306259.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=220661 B5D75_RS07040 WP_002862131.1 1388800..1389111(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain ATCC 35925]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=220661 B5D75_RS07040 WP_002862131.1 1388800..1389111(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain ATCC 35925]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment