Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXX09_RS17965 Genome accession   NZ_CP025865
Coordinates   3671833..3672348 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 504211     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3666833..3677348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX09_RS17920 csrA 3667420..3667605 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CXX09_RS17950 yqaB 3669063..3669629 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXX09_RS17955 yqaA 3669626..3670054 (+) 429 WP_001287457.1 YqaA family protein -
  CXX09_RS17960 gshA 3670127..3671683 (+) 1557 WP_001297214.1 glutamate--cysteine ligase -
  CXX09_RS17965 luxS 3671833..3672348 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CXX09_RS17970 emrB 3672412..3673950 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXX09_RS17975 emrA 3673967..3675139 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXX09_RS17980 emrR 3675266..3675796 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXX09_RS17985 ygaH 3675887..3676222 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXX09_RS17990 ygaZ 3676212..3676949 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=220622 CXX09_RS17965 WP_001130210.1 3671833..3672348(+) (luxS) [Escherichia coli strain 504211]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220622 CXX09_RS17965 WP_001130210.1 3671833..3672348(+) (luxS) [Escherichia coli strain 504211]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737