Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   Vp2S01_RS20955 Genome accession   NZ_CP020035
Coordinates   734515..735696 (-) Length   393 a.a.
NCBI ID   WP_031856133.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20130629002S01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 729515..740696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vp2S01_RS20940 (Vp2S01_A0691) - 730817..731365 (+) 549 WP_031856135.1 GNAT family N-acetyltransferase -
  Vp2S01_RS20945 (Vp2S01_A0692) - 731452..732069 (-) 618 WP_031856134.1 HAD family phosphatase -
  Vp2S01_RS20950 (Vp2S01_A0693) cqsS 732389..734437 (+) 2049 WP_085576965.1 hybrid sensor histidine kinase/response regulator Regulator
  Vp2S01_RS20955 (Vp2S01_A0694) cqsA 734515..735696 (-) 1182 WP_031856133.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Vp2S01_RS20960 (Vp2S01_A0695) ylqF 736051..736995 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  Vp2S01_RS20965 (Vp2S01_A0696) - 737689..738543 (-) 855 WP_029800958.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43923.27 Da        Isoelectric Point: 6.6125

>NTDB_id=220603 Vp2S01_RS20955 WP_031856133.1 734515..735696(-) (cqsA) [Vibrio parahaemolyticus strain 20130629002S01]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECRSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=220603 Vp2S01_RS20955 WP_031856133.1 734515..735696(-) (cqsA) [Vibrio parahaemolyticus strain 20130629002S01]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCACTGCCCTTTGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGATTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTAGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575

Multiple sequence alignment