Detailed information NTG0220572

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Vp2S01_RS02985
• Genome accession: NZ_CP020034
• Coordinates: 567582..568571 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 20130629002S01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 562582..573571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vp2S01_RS02950 (Vp2S01_0510)	ftsB	562590..562871 (+)	282	WP_005455577.1	cell division protein FtsB	-
Vp2S01_RS02955 (Vp2S01_0511)	ispD	562873..563577 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Vp2S01_RS02960 (Vp2S01_0512)	ispF	563595..564071 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Vp2S01_RS02965 (Vp2S01_0513)	truD	564118..565161 (+)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
Vp2S01_RS02970 (Vp2S01_0514)	surE	565161..565937 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
Vp2S01_RS02975 (Vp2S01_0515)	-	565937..566563 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Vp2S01_RS02980 (Vp2S01_0516)	-	566578..567501 (+)	924	WP_021486791.1	peptidoglycan DD-metalloendopeptidase family protein	-
Vp2S01_RS02985 (Vp2S01_0517)	rpoS	567582..568571 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
Vp2S01_RS02990 (Vp2S01_0518)	mutS	568651..571212 (-)	2562	WP_085577166.1	DNA mismatch repair protein MutS	-
Vp2S01_RS02995 (Vp2S01_0519)	pncC	571297..571779 (+)	483	WP_005455551.1	nicotinamide-nucleotide amidase	-
Vp2S01_RS03000 (Vp2S01_0520)	recA	571980..573023 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=220572 Vp2S01_RS02985 WP_005478537.1 567582..568571(+) (rpoS) [Vibrio parahaemolyticus strain 20130629002S01]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=220572 Vp2S01_RS02985 WP_005478537.1 567582..568571(+) (rpoS) [Vibrio parahaemolyticus strain 20130629002S01]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCTGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851