Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | Vp2S01_RS01810 | Genome accession | NZ_CP020034 |
| Coordinates | 344786..345301 (+) | Length | 171 a.a. |
| NCBI ID | WP_015297395.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 20130629002S01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 339786..350301
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Vp2S01_RS01790 (Vp2S01_0309) | - | 339919..342489 (-) | 2571 | WP_005496567.1 | PBP1A family penicillin-binding protein | - |
| Vp2S01_RS01795 (Vp2S01_0310) | pilM | 342632..343648 (+) | 1017 | WP_031855783.1 | type IV pilus assembly protein PilM | Machinery gene |
| Vp2S01_RS01800 (Vp2S01_0311) | pilN | 343632..344210 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| Vp2S01_RS01805 (Vp2S01_0312) | pilO | 344203..344796 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| Vp2S01_RS01810 (Vp2S01_0313) | pilP | 344786..345301 (+) | 516 | WP_015297395.1 | pilus assembly protein PilP | Machinery gene |
| Vp2S01_RS01815 (Vp2S01_0314) | pilQ | 345333..347081 (+) | 1749 | WP_031855784.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| Vp2S01_RS01820 (Vp2S01_0315) | aroK | 347270..347788 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| Vp2S01_RS01825 (Vp2S01_0316) | aroB | 347820..348920 (+) | 1101 | WP_025794806.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18901.02 Da Isoelectric Point: 10.4654
>NTDB_id=220565 Vp2S01_RS01810 WP_015297395.1 344786..345301(+) (pilP) [Vibrio parahaemolyticus strain 20130629002S01]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=220565 Vp2S01_RS01810 WP_015297395.1 344786..345301(+) (pilP) [Vibrio parahaemolyticus strain 20130629002S01]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTTGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGCGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTTGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGCGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
83.041 |
100 |
0.83 |
| pilP | Vibrio cholerae strain A1552 |
57.558 |
100 |
0.579 |