Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GTHT12_RS12495 Genome accession   NZ_CP020030
Coordinates   2499631..2501352 (-) Length   573 a.a.
NCBI ID   WP_008879799.1    Uniprot ID   A0A0Q0UZZ6
Organism   Geobacillus thermodenitrificans strain T12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2494631..2506352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTHT12_RS12460 (GTHT12_01877) - 2495099..2495347 (+) 249 WP_008879793.1 DUF2627 domain-containing protein -
  GTHT12_RS12465 (GTHT12_01878) - 2495351..2496085 (-) 735 WP_011887777.1 glycerophosphodiester phosphodiesterase -
  GTHT12_RS12470 (GTHT12_01879) - 2496194..2496346 (+) 153 WP_078172643.1 YycC family protein -
  GTHT12_RS12475 (GTHT12_01880) - 2496487..2496906 (+) 420 WP_060476063.1 hypothetical protein -
  GTHT12_RS12480 (GTHT12_01881) spo0A 2497038..2497871 (-) 834 WP_087960146.1 sporulation transcription factor Spo0A -
  GTHT12_RS12490 (GTHT12_01882) spoIVB 2498109..2499404 (-) 1296 WP_081157287.1 SpoIVB peptidase -
  GTHT12_RS12495 (GTHT12_01883) recN 2499631..2501352 (-) 1722 WP_008879799.1 DNA repair protein RecN Machinery gene
  GTHT12_RS12500 (GTHT12_01884) argR 2501495..2501944 (-) 450 WP_008879800.1 transcriptional regulator ArgR -
  GTHT12_RS12505 (GTHT12_01885) - 2502028..2502873 (-) 846 WP_008879801.1 TlyA family RNA methyltransferase -
  GTHT12_RS12510 (GTHT12_01886) dxs 2502879..2504771 (-) 1893 WP_011887782.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GTHT12_RS12520 (GTHT12_01887) - 2505036..2505929 (-) 894 WP_008879803.1 polyprenyl synthetase family protein -
  GTHT12_RS12525 (GTHT12_01888) - 2505933..2506163 (-) 231 WP_008879804.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63999.33 Da        Isoelectric Point: 4.7872

>NTDB_id=220531 GTHT12_RS12495 WP_008879799.1 2499631..2501352(-) (recN) [Geobacillus thermodenitrificans strain T12]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQK
CAEVGIDVSEGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEAL
ARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSG
EGRGLDSIGEAMGHLDDVAAMDAALKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=220531 GTHT12_RS12495 WP_008879799.1 2499631..2501352(-) (recN) [Geobacillus thermodenitrificans strain T12]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATCATTGAATCGCTATCTTTGTCCTTTGACAAAGGACTGACAGTGTT
AACCGGCGAAACAGGGGCTGGTAAATCGATCATCATTGATGCGATTCATCTATTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCAGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCACCCATGTTGCCAAAAG
TGCGCTGAGGTCGGCATCGATGTGAGCGAAGGAATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACAACCGCCATATTGCGGGAAGTTGGAGCGACGCTTGTCGATATTCACGGTCAGCATG
AACATCAAGAGCTGATGGATCCATCGCGTCATTTACCGCTTCTTGATGAATTCGGCGGTGCGGAGATGGCGGAGGCGCTC
GCACGCTACCGCGCTGTCTATGAACAGCATGAAGCGTTGGTGAAAAAATTAAAAAAGCTGAGTGAAAATGAACAGCAAAT
GGCGCATCGACTTGATTTATTGACATTTCAGCTGCGCGAAATCGAACAGGCCACACTCGAGCTCGGAGAAGACGAACGGC
TGATGGAAGAAAAAGTGCGCATTGTCAACTTTCAAAAGATATACAGTGCCATCCAAAAAAGCTATGAAGCGCTCTCCGGT
GAAGGACGCGGCCTTGATTCGATCGGGGAAGCGATGGGCCACCTCGATGATGTCGCCGCGATGGATGCTGCGCTGAAGGA
GGCGTACGAAACAGTTGCCAACAGCTACTACTTGCTTGAAGAAGTGATGTACAAGCTGCGCGACCAGCTCGAGGAGCTTG
AGTATGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCTGAAATCCAGCAGTTAAAACGAAAATACGGCGCAACG
ATCGCTGATATTTTGCAATATGCTGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGTGAGACCCATGTGCATGA
ACTTGAGCGACAGCTTGCAGCAGTGACAAGCGATTTGCTGATGGAGGCGGAAAACGTGACCAACGTTCGCCGCACTTACG
CCCGGGAGCTGATTGAACGCATTCACCAAGAGTTAAAAGATTTGTACATGGAGAAGACGCAGTTTGACATCATCTTTGCG
AAACGTGAAGGACCACTCGATGCTCCATTGGTTGATGGCGTGCCGGTTAAGTTTCACGAAGATGGCATCGACGTCGTTGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTGAAACCGCTCGCTAAAGTTGCTTCGGGCGGTGAATTGTCACGGATTA
TGTTAGCGTTGAAAACGATTTTTTCCAAACATCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACAGGCGTCAGC
GGTCGTGTTGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCACCTGCC
GCAAGTGGCTGCCATGGCGGACACGCATTTATTCATCGCCAAAGAAACGGACGGAACGCGGACGAAAACAGTGGTGAAAA
AGTTGGATGAGGAGGAGAAGGTGAAAGAAATCGGGCGAATGATTTCCGGCGTCGAAATGACGGAGTTGACAAAACAGCAT
GCCAAAGAACTGTTAGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0UZZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.628

Multiple sequence alignment