Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B4V02_RS21625 Genome accession   NZ_CP020028
Coordinates   4854520..4856283 (-) Length   587 a.a.
NCBI ID   WP_094156359.1    Uniprot ID   -
Organism   Paenibacillus kribbensis strain AM49     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4849520..4861283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V02_RS21615 (B4V02_21625) - 4850538..4852037 (-) 1500 WP_094156357.1 glycoside hydrolase family 68 protein -
  B4V02_RS21620 (B4V02_21630) rcrQ 4852677..4854527 (-) 1851 WP_094156358.1 ABC transporter ATP-binding protein Regulator
  B4V02_RS21625 (B4V02_21635) rcrP 4854520..4856283 (-) 1764 WP_094156359.1 ABC transporter ATP-binding protein Regulator
  B4V02_RS21630 (B4V02_21640) - 4856330..4856737 (-) 408 WP_007428744.1 MarR family winged helix-turn-helix transcriptional regulator -
  B4V02_RS21635 (B4V02_21645) - 4856879..4857031 (+) 153 WP_157739766.1 hypothetical protein -
  B4V02_RS21640 (B4V02_21650) - 4857249..4858052 (-) 804 WP_094156361.1 alpha/beta hydrolase-fold protein -
  B4V02_RS21645 (B4V02_21655) - 4858096..4858902 (-) 807 WP_094157065.1 Nif3-like dinuclear metal center hexameric protein -
  B4V02_RS21650 (B4V02_21660) - 4859037..4860365 (-) 1329 WP_094156362.1 MFS transporter -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64863.16 Da        Isoelectric Point: 7.3925

>NTDB_id=220482 B4V02_RS21625 WP_094156359.1 4854520..4856283(-) (rcrP) [Paenibacillus kribbensis strain AM49]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPVSELLIPGSYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIMKIADKNWQWTAS
TGAAVAVLILMLSVIIIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADEYQEEKFGQANVELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIVDGHETAGEEGVTGQVEFRNVSFKYPDAEEPVLRNISFTAQRGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQALHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKAAVGIAQSTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETDHATTLIVAQRIGTIKDADRIIVLDQGEVVGNGT
HEELMANCSTYQEIAYSQLSKEELVHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=220482 B4V02_RS21625 WP_094156359.1 4854520..4856283(-) (rcrP) [Paenibacillus kribbensis strain AM49]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGTTATGCAGCCTGGCCTTCATCGTTGTGCAGGT
GTGGCTTGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACAGCAGGAACACCGGTGTCGGAAC
TGCTGATTCCCGGTAGTTACATGCTGTTGTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTTGCGGCAGGGCTGGCCATGCGTCTGCGCGCGATGGTCTTTGACAAGACCTTATCATTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTCATCACCCGCTCCACAAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTATGAAGATTGCAGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGGGCGGCCGTGGCTGTCCTGATCTTGATGCTGAGTGTCATTATTATTTTCGCTCTCCCCAGTTTCCAAAAAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACTGGACTTCGGGTGGTGCGCGCTTATAATGCAGATG
AGTATCAGGAGGAGAAGTTCGGGCAGGCCAATGTCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGCCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCTATCTATTGGATTGGCGCTTACCTGATTAACGGAGC
GGCCGTACCGGACCGCATTACGTTGTTCTCTAATATGGTCGTATTCTCCTCTTATGCGATGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATCTTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATCATGGAGGTATTGAATACCGAA
TCCCGCATCGTTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTACGGGACAGGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGATGCGGAGGAGCCCGTGCTTCGCAACATTAGCTTTACGGCACAACGGGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTTCCCGTTTCTACGATGTGACCGAGGGAGAGGTGCTCGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCGCAGAGAGCCGTGCTTTTCAG
CGGTACGGTGGCATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAGCAGCCGTAG
GGATTGCCCAAAGCACGGAATTTGTTGAAAAAATGGATGGTCAGTACCAGGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTTGATGATTCCTT
TTCGGCACTGGACTACAGAACAGACCGGATTCTGCGTTCCGCTCTCAAAAAAGAAACCGACCATGCGACGACACTCATTG
TTGCTCAGCGCATAGGCACTATTAAGGACGCTGACCGGATTATCGTACTGGATCAGGGTGAGGTTGTAGGGAACGGCACA
CATGAAGAGCTGATGGCGAACTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTTGTACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.254

100

0.533

Multiple sequence alignment