Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B4V02_RS21620 Genome accession   NZ_CP020028
Coordinates   4852677..4854527 (-) Length   616 a.a.
NCBI ID   WP_094156358.1    Uniprot ID   A0A222WTL8
Organism   Paenibacillus kribbensis strain AM49     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4847677..4859527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V02_RS21605 (B4V02_21615) - 4848287..4848751 (+) 465 WP_007428749.1 MarR family transcriptional regulator -
  B4V02_RS21610 (B4V02_21620) - 4848876..4850432 (-) 1557 WP_094156356.1 glycoside hydrolase family 32 protein -
  B4V02_RS21615 (B4V02_21625) - 4850538..4852037 (-) 1500 WP_094156357.1 glycoside hydrolase family 68 protein -
  B4V02_RS21620 (B4V02_21630) rcrQ 4852677..4854527 (-) 1851 WP_094156358.1 ABC transporter ATP-binding protein Regulator
  B4V02_RS21625 (B4V02_21635) rcrP 4854520..4856283 (-) 1764 WP_094156359.1 ABC transporter ATP-binding protein Regulator
  B4V02_RS21630 (B4V02_21640) - 4856330..4856737 (-) 408 WP_007428744.1 MarR family winged helix-turn-helix transcriptional regulator -
  B4V02_RS21635 (B4V02_21645) - 4856879..4857031 (+) 153 WP_157739766.1 hypothetical protein -
  B4V02_RS21640 (B4V02_21650) - 4857249..4858052 (-) 804 WP_094156361.1 alpha/beta hydrolase-fold protein -
  B4V02_RS21645 (B4V02_21655) - 4858096..4858902 (-) 807 WP_094157065.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67703.38 Da        Isoelectric Point: 6.6226

>NTDB_id=220481 B4V02_RS21620 WP_094156358.1 4852677..4854527(-) (rcrQ) [Paenibacillus kribbensis strain AM49]
MDKNEHTVDSKHMKMKQQGPMGGGPAGGMGAGEKANNFKKTISQLLSYGKAYVPMIILSMVLALVGSAFNVIGPGKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLVLLYGFGLIFNYFQGFITVTVSQRLTKKMRTEMSRKINHMPLKYFDTTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGILATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQHAITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTKKLDNAKGDVEFKHVRFGYNEDRMIIKDFSMKA
EAGQKIAIVGPTGSGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRANIHELFCMVLQDTWLFEGTIRDNIVFSKEHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLAKGGFYADLYNSQFEQAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=220481 B4V02_RS21620 WP_094156358.1 4852677..4854527(-) (rcrQ) [Paenibacillus kribbensis strain AM49]
ATGGATAAGAATGAACACACCGTCGACAGCAAGCATATGAAGATGAAACAGCAAGGTCCCATGGGTGGAGGTCCTGCGGG
AGGCATGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACGATCAGCCAGCTCTTATCCTACGGCAAGGCCTATGTGC
CCATGATTATTCTCTCTATGGTGCTGGCCCTGGTCGGTTCCGCCTTCAACGTGATTGGTCCGGGTAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAGTGCTGTCCAGAAGATTGTTCTTGTATTGGTGCTTTT
GTATGGTTTTGGTCTTATCTTTAATTATTTCCAAGGTTTTATTACGGTAACCGTATCACAGCGTCTTACAAAGAAAATGC
GGACAGAGATGTCCCGAAAAATCAATCATATGCCTCTAAAGTATTTTGATACTACGAGCTATGGTAATGTGCTCAGCCGT
GTGACCAACGATGTCGATACTATCGGACAAACGTTAAACAACAGTCTTGGCACGCTTGTCAGCGCGCTGGCAACCTTCGT
GGGCGCATTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGGATTCTAGCTACGCTGATCGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAGAAATATTTTGTAGCACAACAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAACAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
CGGCCGTTTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGCCTGATGATGCCAGTTATGATGTTCATCGGGAATT
TCGGTTATGTCGCGGTCTGTGTCGTAGGCGCTTTGCTGGTGAACCAACATGCGATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCACAGTTGGCACAGGCCGCAACCAATCTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTTGAATTTCTGGGTGAAGAAGAATTGGCGGATGAGAGCGACAAGACCAAGAAGCTGGACAACGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGTTATAACGAAGACCGTATGATTATCAAAGACTTCTCCATGAAAGCT
GAAGCCGGTCAGAAAATTGCCATTGTGGGTCCGACAGGCTCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGCGGGGAAATCTATATTGACGGAACCCCGATCAGCCAATTAACACGTGCGAATATTCATGAATTATTCT
GTATGGTGCTGCAGGATACCTGGCTGTTTGAAGGAACGATCCGTGACAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTGGAAGCCGCATGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACCCTGCCGCAGGGCTATGATACGGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCACCCATGC
TCATTCTGGACGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCGGCTTACTGTA
GGGAAAACCTCCTTTGTGATTGCCCACCGCCTCTCGACGATCAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGCAA
CATTATCGAAACGGGCAACCATGAGGAATTGCTGGCCAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
AAGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(56-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222WTL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.131

93.994

0.528

Multiple sequence alignment