Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CXV93_RS24530 Genome accession   NZ_CP025856
Coordinates   4958905..4960332 (-) Length   475 a.a.
NCBI ID   WP_096955337.1    Uniprot ID   -
Organism   Escherichia coli strain 504838     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4953905..4965332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV93_RS24500 yeeZ 4953960..4954784 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CXV93_RS24505 yeeY 4954830..4955759 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CXV93_RS24510 yoeI 4955974..4956036 (+) 63 WP_010723108.1 membrane protein YoeI -
  CXV93_RS24515 plaP 4956026..4957384 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CXV93_RS24520 tsuA 4957563..4958621 (+) 1059 WP_000492320.1 thiosulfate utilization transporter TsuA/YeeE -
  CXV93_RS24525 tsuB 4958635..4958862 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CXV93_RS24530 sbcB 4958905..4960332 (-) 1428 WP_096955337.1 exodeoxyribonuclease I Machinery gene
  CXV93_RS24535 dacD 4960541..4961707 (+) 1167 WP_001356285.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CXV93_RS24540 - 4961905..4962423 (+) 519 WP_000115885.1 ClbS/DfsB family four-helix bundle protein -
  CXV93_RS24545 - 4962442..4963452 (+) 1011 Protein_4746 ISL3-like element ISEc53 family transposase -
  CXV93_RS24550 tnpA 4963501..4964178 (+) 678 WP_001339397.1 IS66-like element accessory protein TnpA -
  CXV93_RS24555 tnpB 4964178..4964525 (+) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54447.75 Da        Isoelectric Point: 5.4720

>NTDB_id=220386 CXV93_RS24530 WP_096955337.1 4958905..4960332(-) (sbcB) [Escherichia coli strain 504838]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQSGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWLHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=220386 CXV93_RS24530 WP_096955337.1 4958905..4960332(-) (sbcB) [Escherichia coli strain 504838]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGTCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCTGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGTAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATAAATAAATGCCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTACGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577