Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B1T56_RS08605 Genome accession   NZ_CP020025
Coordinates   1704111..1704740 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WB61     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699111..1709740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1T56_RS08580 (B1T56_08515) ycbZ 1699511..1701271 (-) 1761 WP_000156473.1 AAA family ATPase -
  B1T56_RS08585 (B1T56_08520) matP 1701457..1701909 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  B1T56_RS08590 (B1T56_08525) ompA 1701986..1703026 (-) 1041 WP_022645481.1 porin OmpA -
  B1T56_RS08600 (B1T56_08535) sulA 1703383..1703892 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  B1T56_RS08605 (B1T56_08540) sxy/tfoX 1704111..1704740 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B1T56_RS08610 (B1T56_08545) yccS 1704703..1706865 (-) 2163 WP_000875041.1 YccS family putative transporter -
  B1T56_RS08615 (B1T56_08550) yccF 1706875..1707321 (-) 447 WP_001261235.1 YccF domain-containing protein -
  B1T56_RS08620 (B1T56_08555) helD 1707444..1709498 (+) 2055 WP_022645482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=220384 B1T56_RS08605 WP_000839153.1 1704111..1704740(+) (sxy/tfoX) [Escherichia coli strain WB61]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=220384 B1T56_RS08605 WP_000839153.1 1704111..1704740(+) (sxy/tfoX) [Escherichia coli strain WB61]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment