Detailed information NTG0220374

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXV93_RS20030
• Genome accession: NZ_CP025856
• Coordinates: 4067039..4068031 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 504838
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4062039..4073031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXV93_RS20000	ispD	4062101..4062811 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CXV93_RS20005	ispF	4062811..4063290 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXV93_RS20010	truD	4063287..4064336 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CXV93_RS20015	surE	4064317..4065077 (+)	761	Protein_3868	5'/3'-nucleotidase SurE	-
CXV93_RS20020	pcm	4065071..4065697 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXV93_RS20025	nlpD	4065882..4066976 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXV93_RS20030	rpoS	4067039..4068031 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXV93_RS20035	-	4068152..4068559 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
CXV93_RS20040	-	4068706..4069299 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CXV93_RS20045	-	4069299..4070726 (+)	1428	WP_000863224.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CXV93_RS20050	-	4070737..4070973 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CXV93_RS20055	ygbN	4071013..4072377 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=220374 CXV93_RS20030 WP_000081550.1 4067039..4068031(+) (rpoS) [Escherichia coli strain 504838]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=220374 CXV93_RS20030 WP_000081550.1 4067039..4068031(+) (rpoS) [Escherichia coli strain 504838]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715