Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BS21228_RS01715 Genome accession   NZ_CP020023
Coordinates   300409..301029 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain ATCC 21228     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 295409..306029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS21228_RS01675 (BS21228_01650) ptsA 296541..297047 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  BS21228_RS01680 (BS21228_01655) ypqA 297185..297604 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  BS21228_RS01685 (BS21228_01660) sppG 297625..298002 (-) 378 WP_004398696.1 YppG family protein -
  BS21228_RS01690 (BS21228_01665) yppF 298189..298377 (+) 189 WP_003230690.1 YppF family protein -
  BS21228_RS01695 (BS21228_01670) yppE 298416..298787 (-) 372 WP_003246080.1 YppE family protein -
  BS21228_RS01700 (BS21228_01675) yppD 298833..299078 (-) 246 WP_004398488.1 YppD family protein -
  BS21228_RS01705 (BS21228_01680) sspM 299277..299381 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BS21228_RS01710 (BS21228_01685) yppC 299406..300368 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  BS21228_RS01715 (BS21228_01690) recU 300409..301029 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  BS21228_RS01720 (BS21228_01695) ponA 301051..303795 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  BS21228_RS01725 (BS21228_01700) ypoC 303871..304365 (-) 495 WP_009967579.1 YpoC family protein -
  BS21228_RS01730 (BS21228_01705) nth 304362..305021 (-) 660 WP_009967580.1 endonuclease III -
  BS21228_RS01735 (BS21228_01710) dnaD 305040..305738 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=220299 BS21228_RS01715 WP_014480105.1 300409..301029(+) (recU) [Bacillus subtilis strain ATCC 21228]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=220299 BS21228_RS01715 WP_014480105.1 300409..301029(+) (recU) [Bacillus subtilis strain ATCC 21228]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment