Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DGB53_RS08530 Genome accession   NZ_CP020022
Coordinates   1682725..1684416 (-) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes strain LI0521     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1677725..1689416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGB53_RS08510 (DC57_08525) - 1678063..1679058 (-) 996 WP_003727471.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  DGB53_RS08515 (DC57_08530) lpdA 1679083..1680510 (-) 1428 WP_003734501.1 dihydrolipoyl dehydrogenase -
  DGB53_RS08520 (DC57_08535) buk 1680525..1681592 (-) 1068 WP_003734502.1 butyrate kinase -
  DGB53_RS08525 (DC57_08540) - 1681729..1682595 (-) 867 WP_003734503.1 phosphate acyltransferase -
  DGB53_RS08530 (DC57_08545) recN 1682725..1684416 (-) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  DGB53_RS08535 (DC57_08550) argR 1684439..1684888 (-) 450 WP_003744036.1 transcriptional regulator ArgR -
  DGB53_RS08540 (DC57_08555) - 1685079..1685903 (-) 825 WP_003726253.1 TlyA family RNA methyltransferase -
  DGB53_RS08545 (DC57_08560) dxs 1685900..1687729 (-) 1830 WP_010958892.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DGB53_RS08550 (DC57_08565) - 1687896..1688096 (-) 201 WP_003719639.1 cold-shock protein -
  DGB53_RS08555 (DC57_08570) - 1688295..1689176 (-) 882 WP_003726251.1 polyprenyl synthetase family protein -
  DGB53_RS08560 (DC57_08575) - 1689179..1689406 (-) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=220284 DGB53_RS08530 WP_003738883.1 1682725..1684416(-) (recN) [Listeria monocytogenes strain LI0521]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=220284 DGB53_RS08530 WP_003738883.1 1682725..1684416(-) (recN) [Listeria monocytogenes strain LI0521]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGGTCAGCTGATT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAACTTGTAACTACCGTTCTCTTGCGTCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGGGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGTCAAATGGAGGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGTGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGCCAAATTAGGCAATCACTAGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGTAAAACA
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAAGCAAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACATTAGAAAAACAAATCAAACAAGAATTAAATCACTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTCGAA
GCAAACAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGTCACTTACCTCAAGTTGCAGCAATGGCGAACCATCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGGGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535

Multiple sequence alignment