Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   B4602_RS10670 Genome accession   NZ_CP020020
Coordinates   2058621..2059337 (+) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain ATCC 6538     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2053621..2064337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4602_RS10635 - 2053841..2054467 (+) 627 WP_000522384.1 nitroreductase family protein -
  B4602_RS10645 - 2054828..2055613 (+) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  B4602_RS14845 - 2056209..2056343 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  B4602_RS10655 agrB 2056579..2057148 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  B4602_RS10660 - 2057145..2057285 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  B4602_RS10665 - 2057310..2058602 (+) 1293 WP_001657119.1 GHKL domain-containing protein -
  B4602_RS10670 agrA 2058621..2059337 (+) 717 WP_000688498.1 LytTR family DNA-binding domain-containing protein Regulator
  B4602_RS10675 - 2059409..2059518 (+) 110 Protein_1976 hypothetical protein -
  B4602_RS10680 - 2059706..2060665 (-) 960 WP_001253302.1 carbohydrate kinase -
  B4602_RS10685 - 2060662..2062146 (-) 1485 WP_042727666.1 sucrose-6-phosphate hydrolase -
  B4602_RS10690 - 2062295..2063245 (-) 951 WP_000790324.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=220253 B4602_RS10670 WP_000688498.1 2058621..2059337(+) (agrA) [Staphylococcus aureus strain ATCC 6538]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=220253 B4602_RS10670 WP_000688498.1 2058621..2059337(+) (agrA) [Staphylococcus aureus strain ATCC 6538]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment