Detailed information NTG0220252

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXX11_RS07305
• Genome accession: NZ_CP025851
• Coordinates: 1445830..1446822 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 510016
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1440830..1451822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXX11_RS07275	ygbL	1440905..1441543 (+)	639	WP_001278994.1	aldolase	-
CXX11_RS07280	-	1441548..1442156 (+)	609	Protein_1404	HPr family phosphocarrier protein	-
CXX11_RS07285	istA	1442245..1443267 (+)	1023	WP_000255946.1	IS21-like element IS100 family transposase	-
CXX11_RS07290	istB	1443264..1444046 (+)	783	WP_001317493.1	IS21-like element IS100kyp family helper ATPase IstB	-
CXX11_RS07295	-	1444113..1444283 (+)	171	Protein_1407	TIM barrel protein	-
CXX11_RS07300	ygbN	1444372..1445736 (+)	1365	WP_000104441.1	GntP family transporter	-
CXX11_RS07305	rpoS	1445830..1446822 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXX11_RS07310	nlpD	1446885..1447979 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXX11_RS07315	pcm	1448164..1448790 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXX11_RS07320	surE	1448784..1449545 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXX11_RS07325	truD	1449526..1450575 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CXX11_RS07330	ispF	1450572..1451051 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXX11_RS07335	ispD	1451051..1451761 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=220252 CXX11_RS07305 WP_000081550.1 1445830..1446822(-) (rpoS) [Escherichia coli strain 510016]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=220252 CXX11_RS07305 WP_000081550.1 1445830..1446822(-) (rpoS) [Escherichia coli strain 510016]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715