Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXX11_RS07015 Genome accession   NZ_CP025851
Coordinates   1391802..1392317 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 510016     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386802..1397317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX11_RS06990 ygaZ 1387201..1387938 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CXX11_RS06995 ygaH 1387928..1388263 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  CXX11_RS07000 emrR 1388354..1388884 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXX11_RS07005 emrA 1389011..1390183 (+) 1173 Protein_1354 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXX11_RS07010 emrB 1390200..1391738 (+) 1539 WP_001405675.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXX11_RS07015 luxS 1391802..1392317 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CXX11_RS07020 gshA 1392467..1394023 (-) 1557 WP_000611812.1 glutamate--cysteine ligase -
  CXX11_RS07025 yqaA 1394096..1394524 (-) 429 WP_001287454.1 YqaA family protein -
  CXX11_RS07030 yqaB 1394521..1395087 (-) 567 WP_001400878.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXX11_RS07055 csrA 1396271..1396456 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=220249 CXX11_RS07015 WP_001130211.1 1391802..1392317(-) (luxS) [Escherichia coli strain 510016]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220249 CXX11_RS07015 WP_001130211.1 1391802..1392317(-) (luxS) [Escherichia coli strain 510016]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731