Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CXX14_RS15875 Genome accession   NZ_CP025849
Coordinates   3316600..3318027 (-) Length   475 a.a.
NCBI ID   WP_000980633.1    Uniprot ID   -
Organism   Escherichia coli strain 600468     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3311600..3323027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX14_RS15845 yeeZ 3311655..3312479 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  CXX14_RS15850 yeeY 3312525..3313454 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CXX14_RS15855 yoeI 3313669..3313731 (+) 63 WP_010723108.1 membrane protein YoeI -
  CXX14_RS15860 plaP 3313721..3315079 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CXX14_RS15865 tsuA 3315258..3316316 (+) 1059 WP_000492335.1 thiosulfate utilization transporter TsuA/YeeE -
  CXX14_RS15870 tsuB 3316330..3316557 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CXX14_RS15875 sbcB 3316600..3318027 (-) 1428 WP_000980633.1 exodeoxyribonuclease I Machinery gene
  CXX14_RS15880 dacD 3318216..3319382 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CXX14_RS15885 sbmC 3319501..3319974 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  CXX14_RS15890 yeeA 3320173..3321231 (+) 1059 WP_001200891.1 FUSC family protein -
  CXX14_RS15895 tmaR 3321403..3321732 (+) 330 WP_000450409.1 DUF496 family protein -
  CXX14_RS15900 - 3321833..3322126 (-) 294 Protein_3080 EutP/PduV family microcompartment system protein -
  CXX14_RS15905 - 3322108..3322467 (+) 360 WP_032197224.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.83 Da        Isoelectric Point: 5.6070

>NTDB_id=220211 CXX14_RS15875 WP_000980633.1 3316600..3318027(-) (sbcB) [Escherichia coli strain 600468]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=220211 CXX14_RS15875 WP_000980633.1 3316600..3318027(-) (sbcB) [Escherichia coli strain 600468]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
TGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTATGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment