Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   B2J85_RS04555 Genome accession   NZ_CP020017
Coordinates   942707..943750 (+) Length   347 a.a.
NCBI ID   WP_014124890.1    Uniprot ID   A0A2H6DQ50
Organism   Tetragenococcus halophilus strain KUD23     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 937707..948750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2J85_RS04530 - 939791..940906 (+) 1116 WP_014124895.1 CAP-associated domain-containing protein -
  B2J85_RS04535 - 940903..941328 (+) 426 WP_014124894.1 YlbF family regulator -
  B2J85_RS04540 - 941318..941632 (+) 315 WP_014124893.1 YlbG family protein -
  B2J85_RS04545 rsmD 941666..942220 (+) 555 WP_061840465.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  B2J85_RS04550 coaD 942223..942717 (+) 495 WP_014124891.1 pantetheine-phosphate adenylyltransferase -
  B2J85_RS04555 sepM 942707..943750 (+) 1044 WP_014124890.1 SepM family pheromone-processing serine protease Regulator
  B2J85_RS04560 - 943853..944236 (+) 384 WP_014124889.1 DUF1149 family protein -
  B2J85_RS04565 - 944250..944621 (+) 372 WP_014124888.1 VOC family protein -
  B2J85_RS04570 - 944651..945385 (+) 735 WP_014124887.1 metallophosphoesterase -
  B2J85_RS04575 - 945465..947642 (+) 2178 WP_180991174.1 Tex family protein -
  B2J85_RS04580 - 947639..948100 (+) 462 WP_014124885.1 SprT family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38257.23 Da        Isoelectric Point: 4.5199

>NTDB_id=220131 B2J85_RS04555 WP_014124890.1 942707..943750(+) (sepM) [Tetragenococcus halophilus strain KUD23]
MKRDSLKKTLILLIIALAIFASVFLPLPYYIEKPGSTIELKDLITVNDKKDQEDGSFSLTSVGVQQASVVTAIKAKISPF
EELVSEEDLFGGASGEEYDQMQNYYMESSQNAAIQQALKLAKRPYNFEYKGVYVMNVMENSSFNGKIDVGDTVTKVDGKS
FDNNQDFMDYVQQKSIGDTVKVTYEHNDKTKKASGKLVELPSNQKAGIGITLVDHTDITSKDDIDFDVEDIGGPSAGLMF
TLEIYEQLTEEDLRKGKDIAGTGTIDEKGKVGRISGIDKKVASADEAGAQIFFAPNDTISKKVLKKNPGLKSNYQEAKET
ADSLDTDMKIVPVKTLQDAIDYLKQMD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=220131 B2J85_RS04555 WP_014124890.1 942707..943750(+) (sepM) [Tetragenococcus halophilus strain KUD23]
ATGAAGCGTGATTCTTTAAAAAAAACGTTAATACTTTTGATCATTGCACTCGCTATTTTCGCGAGTGTCTTTTTACCTTT
ACCCTATTATATTGAAAAGCCCGGTTCTACAATTGAACTTAAAGATTTAATCACTGTTAATGATAAAAAAGACCAGGAAG
ATGGTTCTTTTTCCCTAACTTCGGTAGGTGTTCAGCAGGCTTCAGTTGTTACAGCAATAAAAGCAAAGATTTCTCCTTTT
GAAGAATTGGTTTCAGAAGAAGATCTTTTCGGTGGGGCGAGTGGTGAAGAATATGATCAGATGCAAAATTATTATATGGA
ATCCTCGCAAAACGCAGCGATTCAACAAGCGCTAAAGTTGGCAAAGCGCCCTTATAACTTTGAGTATAAGGGTGTTTATG
TGATGAATGTGATGGAAAATTCGAGCTTTAATGGAAAAATAGATGTTGGTGACACAGTAACGAAAGTCGATGGAAAAAGC
TTTGATAATAACCAGGATTTTATGGATTATGTTCAGCAAAAGTCAATTGGTGACACTGTAAAAGTAACTTATGAACATAA
TGATAAAACAAAGAAAGCTAGTGGCAAGCTGGTAGAACTACCAAGTAATCAAAAAGCAGGAATCGGCATTACTTTAGTAG
ATCACACAGATATTACTTCAAAAGACGATATTGATTTTGATGTAGAGGATATTGGCGGACCTTCTGCTGGTTTAATGTTT
ACACTAGAAATTTATGAACAACTGACTGAAGAAGATTTGAGAAAAGGAAAAGATATCGCAGGAACAGGTACCATTGATGA
AAAAGGCAAAGTCGGGCGAATCAGTGGTATTGACAAAAAAGTGGCCAGCGCAGATGAAGCAGGTGCGCAAATCTTTTTTG
CGCCCAATGATACAATAAGTAAAAAAGTATTAAAGAAAAACCCCGGCTTAAAATCTAACTATCAGGAAGCTAAAGAGACA
GCTGATAGTTTAGATACGGACATGAAAATCGTTCCGGTAAAAACCTTACAAGATGCTATTGATTATTTAAAACAGATGGA
TTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-298)

PDZ domain (PDZ_2)

(130-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H6DQ50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.149

96.542

0.484

Multiple sequence alignment