Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   OTEC02_RS16925 Genome accession   NZ_CP020015
Coordinates   3563473..3565701 (+) Length   742 a.a.
NCBI ID   WP_081175420.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3558473..3570701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS16900 (OTEC02_16900) lnt 3558992..3560551 (+) 1560 WP_081175418.1 apolipoprotein N-acyltransferase -
  OTEC02_RS16905 (OTEC02_16905) - 3560553..3560891 (-) 339 WP_031947232.1 tRNA-binding protein -
  OTEC02_RS16910 (OTEC02_16910) - 3561037..3561381 (-) 345 WP_031947231.1 hypothetical protein -
  OTEC02_RS16915 (OTEC02_16915) gspG 3561649..3562098 (-) 450 WP_227513998.1 type II secretion system major pseudopilin GspG -
  OTEC02_RS16920 (OTEC02_16920) gspF 3562119..3563324 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  OTEC02_RS16925 (OTEC02_16925) priA 3563473..3565701 (+) 2229 WP_081175420.1 primosomal protein N' Machinery gene
  OTEC02_RS16930 (OTEC02_16930) - 3565778..3567622 (+) 1845 WP_081175422.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  OTEC02_RS16935 (OTEC02_16935) - 3567786..3568661 (+) 876 WP_081175424.1 Hsp33 family molecular chaperone HslO -
  OTEC02_RS16940 (OTEC02_16940) - 3568799..3569410 (+) 612 WP_057104864.1 LysE family translocator -
  OTEC02_RS16945 (OTEC02_16945) - 3569557..3570513 (+) 957 WP_081175426.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84058.84 Da        Isoelectric Point: 8.6629

>NTDB_id=220105 OTEC02_RS16925 WP_081175420.1 3563473..3565701(+) (priA) [Acinetobacter lactucae strain OTEC-02]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERARVGSRVAISFGRQNLIGIITEKVNPNESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVLLGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHEVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=220105 OTEC02_RS16925 WP_081175420.1 3563473..3565701(+) (priA) [Acinetobacter lactucae strain OTEC-02]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCCCGCGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAACCTGA
TTGGCATCATTACTGAAAAAGTAAACCCAAATGAATCATTTACAGGCACCTTTCAACTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCCCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACCGCCCTACCTGCATTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATTACAC
CATGTGATAATGTTGAAGCACTTCTCAAACGTTCTGTTAAGCAACAAGACGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACTGCTACTCTTAAAGCGCTTCAAAAGAAAGGACTGGTAGA
CTGCACACTTGAACCACACGACTTTAGCCCATCGCCTGTTCAATTGGCACAAATGCCGCTTACACTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCAATACCAAGCCTTCTTGTTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTTTTGGTTTTGGTCCCTGAAATTGGTTT
AACCCCTCAAACGATTTCTCGTTTTAAATCGCGTTTTAACTGTGATATTGCTCTATTACACTCTGGCTTAAATGACTCTA
AACGTTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGGACGCGCTCAGCGATCTATACACCA
CTGCCACGTTTAGGCTTAATCATTTTAGATGAAGAGCATGACTTGTCTTATAAACAGCAAGAAGGCTTCCGCTACCATGC
ACGTGATGTCGCACTTTATCGAGGTCACTTGCAAAACTGCCCTGTTCTTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACTTCACTGCAACTTAATCAACGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAACCTTTAATAGAACAAATTAAAAACACCCTAGCCAG
AAAAGAGCAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTGTGTGAAAGCTGTGGCTGGCAAGCAA
ATTGTCCGCATTGTGATGCACATTTTACTTTGCATACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGCACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGTCAGCAAAAAAGCCTAAAAACCTTAGGTGCTGGAACAGCCAAGGTTGAAGA
GCACTTACAAGAATTATTTCCCGAACATGAGGTGATTCGGGTTGACCGTGACAGCACGAGTCGTGTGGGTAGCTGGCAAA
AAATTTATGATCGTATTCACCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCAAAAGGCCATCACTTCCCA
CATGTTACTTTGGTTGCTATTTTAGATATTGATGCGGGCTTATTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCTGGACGTGCAGGCCGTGGCGAACATAAAGGCCATGTTTACTTACAAACCCTAAGACCAGATC
ACCCTTTACTCACCACACTCATTGAAAAAGATTATCGGGCAGTTGCTAAACAGACGCTTGCAGAACGTAAAGTCGCATTG
CTCCCACCTTATCGCTATGCGGTACTGATACGTGCAGAGTCCAAAGACCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTGGCTGGTGAAATTGTTGATATTTGGGGACCTATTCCAGCTCCTATGGAGCGTAAAGCTG
GACGCTACCGCGCACATATGGTGATTTTGTCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTAGTTCATGCACCGCGCCAGCATCAACTCAGGCTATCAATTGATGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.439

100

0.974

Multiple sequence alignment