Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   OTEC02_RS02365 Genome accession   NZ_CP020015
Coordinates   478587..479471 (+) Length   294 a.a.
NCBI ID   WP_081172717.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473587..484471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS02340 (OTEC02_02340) - 473897..475144 (-) 1248 WP_016143545.1 YihY family inner membrane protein -
  OTEC02_RS02345 (OTEC02_02345) wrbA 475506..476114 (+) 609 WP_213033138.1 NAD(P)H:quinone oxidoreductase -
  OTEC02_RS02350 (OTEC02_02350) - 476162..476737 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  OTEC02_RS02355 (OTEC02_02355) - 476809..477522 (-) 714 WP_081172716.1 DUF3108 domain-containing protein -
  OTEC02_RS02360 (OTEC02_02360) - 477680..478354 (-) 675 WP_057104941.1 hypothetical protein -
  OTEC02_RS02365 (OTEC02_02365) tonB2 478587..479471 (+) 885 WP_081172717.1 TonB family protein Machinery gene
  OTEC02_RS02370 (OTEC02_02370) ybeY 479524..480000 (-) 477 WP_031949408.1 rRNA maturation RNase YbeY -
  OTEC02_RS02375 (OTEC02_02375) - 480010..481098 (-) 1089 WP_002119513.1 PhoH family protein -
  OTEC02_RS02380 (OTEC02_02380) miaB 481136..482587 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33733.36 Da        Isoelectric Point: 9.1625

>NTDB_id=220086 OTEC02_RS02365 WP_081172717.1 478587..479471(+) (tonB2) [Acinetobacter lactucae strain OTEC-02]
MLNKRSRFIEPFHYWWQDRVFVAATILAILLHIFVLLIQFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTLNPMLSDASTGNAELETLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHPILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=220086 OTEC02_RS02365 WP_081172717.1 478587..479471(+) (tonB2) [Acinetobacter lactucae strain OTEC-02]
ATGCTGAACAAAAGAAGCCGATTCATAGAGCCTTTTCATTATTGGTGGCAAGACAGAGTCTTTGTTGCTGCAACAATATT
AGCAATTTTGCTGCATATTTTTGTATTGCTTATTCAATTTGCTATGCCCAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGACCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCACAAGCAGACCAGCAGGGTTCAGGTGCA
TTTCGTGAGGCTCACCGGACTTCTAGTGATACTCTAAATCCTATGCTTAGTGATGCTTCAACTGGAAATGCAGAGTTAGA
AACTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAGTTTGAAGAAAAAGTCTTAATGACAGTTTTGAGTTGGCAAAAAC
AAGCTGATGCAAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCCAGC
CTTGAAGCACAATATTTACAACGTAGGCAAGATTTCAGCCGCCAGCAAAAAATAAAAACAGTAGACGGAATTCAAGCAAA
GAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTATCCGGAAGAAG
CCAAACAGCAACAACTAAGAGGTGAAGTACGTTTAATGGTGATTTTGAATGCTCAAGGTGGAATTCGTGCAATCCGTTTG
CTTGAAAGCTCAGGGCATCCAATACTTGATGAAGCCGCTAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TGCCAATATGAAAGACATTTCGGAATTACGTATTGTGCGTACTTGGCGCTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884

Multiple sequence alignment