Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXX37_RS20950 Genome accession   NZ_CP025842
Coordinates   4169244..4169759 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 720632     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4164244..4174759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX37_RS20905 csrA 4164696..4164881 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CXX37_RS20935 yqaB 4166474..4167040 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXX37_RS20940 yqaA 4167037..4167465 (+) 429 WP_001287454.1 YqaA family protein -
  CXX37_RS20945 gshA 4167538..4169094 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CXX37_RS20950 luxS 4169244..4169759 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CXX37_RS20955 emrB 4169823..4171361 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXX37_RS20960 emrA 4171378..4172550 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXX37_RS20965 emrR 4172677..4173207 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXX37_RS20970 ygaH 4173298..4173633 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXX37_RS20975 ygaZ 4173623..4174360 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=220059 CXX37_RS20950 WP_001130211.1 4169244..4169759(+) (luxS) [Escherichia coli strain 720632]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220059 CXX37_RS20950 WP_001130211.1 4169244..4169759(+) (luxS) [Escherichia coli strain 720632]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731