Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BVZ63_RS03540 Genome accession   NZ_CP020014
Coordinates   714101..714397 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain 11P6H     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709101..719397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVZ63_RS03515 (BVZ63_719) - 709308..710066 (-) 759 WP_012054646.1 DUF3800 domain-containing protein -
  BVZ63_RS03520 (BVZ63_720) aroE 710078..710884 (-) 807 WP_105197694.1 shikimate dehydrogenase -
  BVZ63_RS03525 (BVZ63_721) - 710888..711439 (-) 552 WP_105197696.1 Sua5/YciO/YrdC/YwlC family protein -
  BVZ63_RS03530 (BVZ63_722) - 711455..711991 (-) 537 WP_105197698.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  BVZ63_RS03535 (BVZ63_723) - 712001..713917 (-) 1917 WP_105197700.1 ABC transporter ATP-binding protein -
  BVZ63_RS03540 (BVZ63_724) HI0659 714101..714397 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  BVZ63_RS03545 (BVZ63_725) - 714390..714572 (-) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  BVZ63_RS03550 (BVZ63_726) - 714842..717875 (-) 3034 Protein_655 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  BVZ63_RS09155 - 718178..718267 (+) 90 Protein_656 ABC transporter -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=220056 BVZ63_RS03540 WP_005650837.1 714101..714397(-) (HI0659) [Haemophilus influenzae strain 11P6H]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=220056 BVZ63_RS03540 WP_005650837.1 714101..714397(-) (HI0659) [Haemophilus influenzae strain 11P6H]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment