Detailed information NTG0220056

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXX37_RS20670
• Genome accession: NZ_CP025842
• Coordinates: 4116291..4117283 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 720632
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4111291..4122283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXX37_RS20640	ispD	4111352..4112062 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CXX37_RS20645	ispF	4112062..4112541 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXX37_RS20650	truD	4112538..4113587 (+)	1050	WP_074527000.1	tRNA pseudouridine(13) synthase TruD	-
CXX37_RS20655	surE	4113568..4114329 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXX37_RS20660	pcm	4114323..4114949 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXX37_RS20665	nlpD	4115134..4116228 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CXX37_RS20670	rpoS	4116291..4117283 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXX37_RS20675	ygbN	4117377..4118741 (-)	1365	WP_000104441.1	GntP family transporter	-
CXX37_RS20680	ygbM	4118830..4119606 (-)	777	WP_074526999.1	HPr family phosphocarrier protein	-
CXX37_RS20685	ygbL	4119611..4120249 (-)	639	Protein_4026	aldolase	-
CXX37_RS20690	otnK	4120246..4121508 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=220056 CXX37_RS20670 WP_000081550.1 4116291..4117283(+) (rpoS) [Escherichia coli strain 720632]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=220056 CXX37_RS20670 WP_000081550.1 4116291..4117283(+) (rpoS) [Escherichia coli strain 720632]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715