Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BV140_RS04090 Genome accession   NZ_CP020013
Coordinates   802043..802339 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain 6P32H1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 797043..807339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV140_RS04065 (BV140_826) - 797217..798008 (-) 792 WP_005688143.1 DUF3800 domain-containing protein -
  BV140_RS04070 (BV140_827) aroE 798020..798826 (-) 807 WP_005688144.1 shikimate dehydrogenase -
  BV140_RS04075 (BV140_828) - 798830..799381 (-) 552 WP_005688145.1 Sua5/YciO/YrdC/YwlC family protein -
  BV140_RS04080 (BV140_829) - 799397..799933 (-) 537 WP_005688146.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  BV140_RS04085 (BV140_830) - 799943..801859 (-) 1917 WP_005688147.1 ABC transporter ATP-binding protein -
  BV140_RS04090 (BV140_831) HI0659 802043..802339 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  BV140_RS04095 (BV140_832) - 802332..802514 (-) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  BV140_RS04100 (BV140_833) - 802784..805893 (-) 3110 Protein_770 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=220020 BV140_RS04090 WP_005650837.1 802043..802339(-) (HI0659) [Haemophilus influenzae strain 6P32H1]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=220020 BV140_RS04090 WP_005650837.1 802043..802339(-) (HI0659) [Haemophilus influenzae strain 6P32H1]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment