Detailed information NTG0022001

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: XCC_RS16070
• Genome accession: NC_003902
• Coordinates: 3671579..3673312 (-)
• Length: 577 a.a.
• NCBI ID: WP_011038212.1
• Uniprot ID: Q8P673
• Organism: Xanthomonas campestris pv. campestris str. ATCC 33913
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3666579..3678312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XCC_RS16055 (XCC3095)	-	3667947..3669557 (+)	1611	WP_011038210.1	sensor histidine kinase	-
XCC_RS16060 (XCC3096)	pilR	3669766..3671160 (+)	1395	WP_043877723.1	sigma-54-dependent transcriptional regulator	Regulator
XCC_RS16070 (XCC3097)	pilB	3671579..3673312 (-)	1734	WP_011038212.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XCC_RS16075 (XCC3098)	-	3673377..3673811 (-)	435	WP_011038213.1	pilin	-
XCC_RS16080 (XCC3099)	pilE	3673891..3674331 (-)	441	WP_011038214.1	pilin	Machinery gene
XCC_RS16085 (XCC3100)	pilC	3674658..3675914 (+)	1257	WP_011038215.1	type II secretion system F family protein	Machinery gene
XCC_RS16090 (XCC3101)	-	3675921..3676784 (+)	864	WP_011038216.1	prepilin peptidase	-
XCC_RS16095 (XCC3102)	coaE	3676798..3677421 (+)	624	WP_011038217.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 577 a.a.
• Molecular weight: 62785.06 Da
• Isoelectric Point: 5.5903

>NTDB_id=22001 XCC_RS16070 WP_011038212.1 3671579..3673312(-) (pilB) [Xanthomonas campestris pv. campestris str. ATCC 33913]
MSVVLTANLVGITGIARRLVQDGALEEAVARGAMDQAALAKVPLPQWFAEKKLVSAAQLASANAVEFGMPLMDVSVFDAS
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSSLG
DDDDEMGDLDVSTGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQK
LFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
EHALLAEGFTPEQVANIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMK
ASHGVTSLAEINRVTKD

Nucleotide

• Length: 1734 bp

>NTDB_id=22001 XCC_RS16070 WP_011038212.1 3671579..3673312(-) (pilB) [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGAGCGTTGTGCTAACGGCTAATCTTGTTGGAATCACGGGCATTGCTCGACGTCTTGTGCAAGACGGTGCGCTCGAAGA
GGCGGTTGCTCGTGGTGCGATGGATCAGGCAGCACTCGCCAAAGTGCCTTTACCCCAGTGGTTTGCTGAAAAAAAGCTAG
TCTCTGCTGCGCAGCTCGCCTCTGCCAATGCAGTTGAGTTCGGTATGCCGCTGATGGATGTGTCGGTGTTCGACGCCAGC
CAGAACGCGGTCAAGCTGGTCAGTGAGGAGTTGCTTCAGAAGCATCAGGTACTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAATCCGACGCAGACCAGGGCGCTGGACGATATCAAGTTCCACACCAATCTGGTGGTCGAGCCGA
TCCTGGTAGACGAAGACCAGATCCGTCGCACATTGGAGCAGTGGCAGGCCAGCAATGCGGCGCTCGGCTCTTCGCTCGGC
GACGACGATGATGAGATGGGGGATCTGGACGTCTCTACCGGGGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGATGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTGCGGTTGCGGATCGATGGGCTGTTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTCAACCAGCGCATCGCGGCGCGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTGAGCACCTTGCCAACCCTGTTCGGCGAGA
AGGTGGTACTGCGTATCCTGGACGCCAGTGCGGCCAAGCTTGGTATCGAGAAGCTGGGCTATGAGGCGGACCAACAGAAG
CTGTTCCTGGATGCGATACACAAGCCCTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCT
GTATACCGCGCTCGGGATTCTCAACGACGAGACGCGCAATATTTCCACGGCCGAGGATCCGGTTGAAATCCGCTTGCCTG
GTGTGAATCAGGTGCAGCAGAACGTCAAGCGCGGTATGACCTTCGCGGCGGCGCTGCGCTCGTTCCTGCGCCAGGATCCG
GACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGCCACATGGT
TCTGTCGACACTGCACACCAACGATGCGCCGCAAACCATTGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCA
CCTCGTCGGTGACTCTGGTCATCGCGCAGCGCTTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCG
GAACATGCGCTGCTGGCGGAAGGCTTTACGCCGGAGCAGGTTGCGAACATCGAGCTCTATGAAGCGGTCGGTTGCGATGA
GTGCACGGAAGGCTACAAGGGCCGTACCGGCATCTATCAGGTGATGCCGATGACGGACGAAATCGGCGCGATCGTGCTGG
AAGGCGGCAATGCGATGCAGATCGCCGAGGCCGCACAGAAGATCGGTATCCGCGACCTGCGCCAGTCGGCGTTGATGAAG
GCTTCGCACGGGGTGACCAGCCTGGCCGAAATCAATCGTGTGACCAAGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (201-468)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (49-153)

3D structure

• AlphaFold DB: Q8P673

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	56.162	98.44	0.553
pilB	Acinetobacter baylyi ADP1	55.458	98.44	0.546
pilB	Legionella pneumophila strain ERS1305867	51.937	98.44	0.511
pilF	Neisseria gonorrhoeae MS11	48.415	98.44	0.477
pilB	Vibrio cholerae strain A1552	49.002	95.494	0.468
pilB	Vibrio campbellii strain DS40M4	45.694	98.614	0.451
pilB	Vibrio parahaemolyticus RIMD 2210633	45.471	97.574	0.444