Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CXX37_RS00725 Genome accession   NZ_CP025842
Coordinates   124023..125450 (-) Length   475 a.a.
NCBI ID   WP_074526632.1    Uniprot ID   -
Organism   Escherichia coli strain 720632     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119023..130450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX37_RS00695 yeeZ 119078..119902 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CXX37_RS00700 yeeY 119948..120877 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  CXX37_RS00705 yoeI 121092..121154 (+) 63 WP_010723108.1 membrane protein YoeI -
  CXX37_RS00710 plaP 121144..122502 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CXX37_RS00715 tsuA 122681..123739 (+) 1059 WP_074526636.1 thiosulfate utilization transporter TsuA/YeeE -
  CXX37_RS00720 tsuB 123753..123980 (+) 228 WP_074526634.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CXX37_RS00725 sbcB 124023..125450 (-) 1428 WP_074526632.1 exodeoxyribonuclease I Machinery gene
  CXX37_RS00730 dacD 125659..126825 (+) 1167 WP_000830174.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CXX37_RS00735 sbmC 126944..127417 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  CXX37_RS00740 yeeA 127616..128674 (+) 1059 WP_001200891.1 FUSC family protein -
  CXX37_RS00745 tmaR 128846..129175 (+) 330 WP_000450409.1 DUF496 family protein -
  CXX37_RS00750 - 129276..129458 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CXX37_RS26130 - 129578..129658 (+) 81 WP_023441679.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.83 Da        Isoelectric Point: 5.6086

>NTDB_id=219988 CXX37_RS00725 WP_074526632.1 124023..125450(-) (sbcB) [Escherichia coli strain 720632]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSNADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQSYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=219988 CXX37_RS00725 WP_074526632.1 124023..125450(-) (sbcB) [Escherichia coli strain 720632]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCTG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTATAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGACGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTA
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAAGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment