Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | BV139_RS03010 | Genome accession | NZ_CP020012 |
| Coordinates | 593198..593704 (-) | Length | 168 a.a. |
| NCBI ID | WP_005649305.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 6P24H2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 588198..598704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV139_RS02980 (BV139_606) | nudC | 588691..589485 (-) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| BV139_RS02985 (BV139_607) | nfuA | 589552..590148 (-) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| BV139_RS02990 (BV139_608) | - | 590224..590910 (-) | 687 | WP_005686895.1 | ComF family protein | - |
| BV139_RS02995 (BV139_609) | comE | 590923..592260 (-) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BV139_RS03000 (BV139_610) | comD | 592270..592683 (-) | 414 | WP_005686898.1 | pilus assembly protein PilP | Machinery gene |
| BV139_RS03005 (BV139_611) | comC | 592680..593201 (-) | 522 | WP_005686899.1 | competence protein ComC | Machinery gene |
| BV139_RS03010 (BV139_612) | comB | 593198..593704 (-) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| BV139_RS03015 (BV139_613) | comA | 593705..594502 (-) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| BV139_RS03020 (BV139_614) | - | 594601..597195 (+) | 2595 | WP_005686901.1 | penicillin-binding protein 1A | - |
| BV139_RS03025 (BV139_615) | - | 597271..598116 (+) | 846 | WP_005686902.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| BV139_RS03030 (BV139_616) | - | 598269..598598 (+) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19724.61 Da Isoelectric Point: 8.5473
>NTDB_id=219976 BV139_RS03010 WP_005649305.1 593198..593704(-) (comB) [Haemophilus influenzae strain 6P24H2]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=219976 BV139_RS03010 WP_005649305.1 593198..593704(-) (comB) [Haemophilus influenzae strain 6P24H2]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
99.405 |
100 |
0.994 |
| comB | Haemophilus influenzae Rd KW20 |
99.405 |
100 |
0.994 |