Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   BV139_RS00315 Genome accession   NZ_CP020012
Coordinates   63307..65673 (-) Length   788 a.a.
NCBI ID   WP_005687515.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 6P24H2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 58307..70673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV139_RS00300 (BV139_60) kdsB 59597..60361 (-) 765 WP_005687509.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BV139_RS00305 (BV139_61) lpxK 60432..61430 (-) 999 WP_005687511.1 tetraacyldisaccharide 4'-kinase -
  BV139_RS00310 (BV139_62) msbA 61503..63266 (-) 1764 WP_005687513.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BV139_RS00315 (BV139_63) rec2 63307..65673 (-) 2367 WP_005687515.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BV139_RS00320 (BV139_64) dksA 65933..66370 (+) 438 WP_005657744.1 RNA polymerase-binding protein DksA -
  BV139_RS00325 (BV139_66) pcnB 66617..67975 (+) 1359 WP_005687517.1 polynucleotide adenylyltransferase PcnB -
  BV139_RS00330 (BV139_67) folK 67984..68466 (+) 483 WP_005687519.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  BV139_RS00335 (BV139_68) tsaE 68542..69018 (+) 477 WP_005693857.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  BV139_RS00340 (BV139_69) - 69026..70324 (+) 1299 WP_005687525.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89356.86 Da        Isoelectric Point: 10.0542

>NTDB_id=219961 BV139_RS00315 WP_005687515.1 63307..65673(-) (rec2) [Haemophilus influenzae strain 6P24H2]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVAFVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
GIGFCLVRVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTVVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGSTGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWRIYREPE
VSSSTWKIKRPRFFTLNLSKPLLKNERINVLRCSFGIILLCFTILLFKQFSKSTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSQKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARALGKIDVLQVGHHGSKTSTSEHLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=219961 BV139_RS00315 WP_005687515.1 63307..65673(-) (rec2) [Haemophilus influenzae strain 6P24H2]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTTTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCGCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACGGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGGATGTTTCATCATTGCGAGCAGAAAAATTGCAACA
AGTGAAAAAACAAACAGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTGCTTGGTGCGTGTTGTGCAAGTATTTTTCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGGTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCTCTTTTTCAATGGAAAAATCGCCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTTTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAAGTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GTTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACGATTTTGTTGTTTAAACAATTTAGTAAGTCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCAACAATTTTAAAGGCGTATCCCAATGTGGAAT
TAATTACCCCTTCGCAAAAAAATTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTAATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTGCTAACTGGCGACGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCGCTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCAACAAGTGAACACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(29-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

96.447

100

0.964

Multiple sequence alignment