Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXX41_RS14785 Genome accession   NZ_CP025840
Coordinates   2992226..2992741 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 214-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987226..2997741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX41_RS14740 csrA 2987813..2987998 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CXX41_RS14770 yqaB 2989456..2990022 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXX41_RS14775 yqaA 2990019..2990447 (+) 429 WP_001287454.1 YqaA family protein -
  CXX41_RS14780 gshA 2990520..2992076 (+) 1557 WP_097344764.1 glutamate--cysteine ligase -
  CXX41_RS14785 luxS 2992226..2992741 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CXX41_RS14790 emrB 2992805..2994343 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXX41_RS14795 emrA 2994360..2995532 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXX41_RS14800 emrR 2995659..2996189 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXX41_RS14805 ygaH 2996280..2996615 (-) 336 WP_129547230.1 L-valine transporter subunit YgaH -
  CXX41_RS14810 ygaZ 2996605..2997342 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=219959 CXX41_RS14785 WP_001130211.1 2992226..2992741(+) (luxS) [Escherichia coli strain 214-4]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=219959 CXX41_RS14785 WP_001130211.1 2992226..2992741(+) (luxS) [Escherichia coli strain 214-4]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731