Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CV83906_RS20820 Genome accession   NZ_CP025753
Coordinates   3879656..3881083 (-) Length   475 a.a.
NCBI ID   WP_000980616.1    Uniprot ID   -
Organism   Escherichia coli strain CV839-06     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3874656..3886083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV83906_RS20790 (CV83906_3828) yeeZ 3874721..3875545 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  CV83906_RS20795 (CV83906_3829) yeeY 3875591..3876520 (+) 930 WP_000803354.1 LysR substrate-binding domain-containing protein -
  CV83906_RS20800 yoeI 3876735..3876797 (+) 63 WP_010723108.1 membrane protein YoeI -
  CV83906_RS20805 (CV83906_3830) plaP 3876787..3878145 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CV83906_RS20810 (CV83906_3831) tsuA 3878314..3879372 (+) 1059 WP_000492347.1 thiosulfate utilization transporter TsuA/YeeE -
  CV83906_RS20815 (CV83906_3832) tsuB 3879386..3879613 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CV83906_RS20820 (CV83906_3833) sbcB 3879656..3881083 (-) 1428 WP_000980616.1 exodeoxyribonuclease I Machinery gene
  CV83906_RS20825 (CV83906_3834) dacD 3881292..3882458 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CV83906_RS20830 (CV83906_3835) sbmC 3882577..3883050 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  CV83906_RS20835 (CV83906_3836) yeeA 3883249..3884307 (+) 1059 WP_001200891.1 FUSC family protein -
  CV83906_RS20840 (CV83906_3838) tmaR 3884479..3884808 (+) 330 WP_000450409.1 DUF496 family protein -
  CV83906_RS26635 - 3884909..3885274 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54487.78 Da        Isoelectric Point: 5.6070

>NTDB_id=219891 CV83906_RS20820 WP_000980616.1 3879656..3881083(-) (sbcB) [Escherichia coli strain CV839-06]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNTVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=219891 CV83906_RS20820 WP_000980616.1 3879656..3881083(-) (sbcB) [Escherichia coli strain CV839-06]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATACCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579