Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   BV122_RS05330 Genome accession   NZ_CP020009
Coordinates   1049988..1050500 (+) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 5P54H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1044988..1055500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV122_RS05310 (BV122_1081) nrfF 1045288..1046442 (-) 1155 WP_042593716.1 heme lyase NrfEFG subunit NrfF -
  BV122_RS05315 (BV122_1082) - 1046439..1046969 (-) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -
  BV122_RS05320 (BV122_1083) nrfE 1046969..1048876 (-) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  BV122_RS05325 (BV122_1084) suhB 1048985..1049788 (-) 804 WP_005664157.1 inositol-1-monophosphatase -
  BV122_RS05330 (BV122_1085) comN 1049988..1050500 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BV122_RS05335 (BV122_1086) comO 1050500..1051216 (+) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  BV122_RS05340 (BV122_1087) comP 1051231..1051914 (+) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  BV122_RS05345 (BV122_1088) comQ 1051907..1052194 (+) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=219879 BV122_RS05330 WP_013526183.1 1049988..1050500(+) (comN) [Haemophilus influenzae strain 5P54H1]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=219879 BV122_RS05330 WP_013526183.1 1049988..1050500(+) (comN) [Haemophilus influenzae strain 5P54H1]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAGCGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment