Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C1I23_RS05505 Genome accession   NZ_CP025747
Coordinates   1061775..1062290 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ML35     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056775..1067290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1I23_RS05460 (C1I23_05485) csrA 1057362..1057547 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C1I23_RS05490 (C1I23_05515) yqaB 1059005..1059571 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C1I23_RS05495 (C1I23_05520) yqaA 1059568..1059996 (+) 429 WP_001287454.1 YqaA family protein -
  C1I23_RS05500 (C1I23_05525) gshA 1060069..1061625 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C1I23_RS05505 (C1I23_05530) luxS 1061775..1062290 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C1I23_RS05510 (C1I23_05535) emrB 1062354..1063892 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C1I23_RS05515 (C1I23_05540) emrA 1063909..1065081 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C1I23_RS05520 (C1I23_05545) emrR 1065208..1065738 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C1I23_RS05525 (C1I23_05550) ygaH 1065829..1066164 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C1I23_RS05530 (C1I23_05555) ygaZ 1066154..1066891 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=219767 C1I23_RS05505 WP_001130211.1 1061775..1062290(+) (luxS) [Escherichia coli strain ML35]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=219767 C1I23_RS05505 WP_001130211.1 1061775..1062290(+) (luxS) [Escherichia coli strain ML35]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCATATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment